Browse Element(s) Details


OsAffx.30141.1.S1_at

Description tigr:9637.m02968
TID=OsAffx.30141.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3487011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g34850Os.22786.1.S1_at11/119+20313087..20315233DNA polymerase delta subunit 4 family, putative, expressed
LOC_Os09g34860OsAffx.6480.1.S1_at11/119+20316429..20320515hydrolase, alpha/beta fold family protein, expressed
LOC_Os09g34870OsAffx.30141.1.S1_at11/119+20321406..20325291pentatricopeptide, putative, expressed
LOC_Os09g34880Os.5537.1.S1_s_at11/119+20326202..20329844expressed protein
LOC_Os09g34890Os.55378.1.S1_at11/119+20330402..20331847expressed protein
LOC_Os09g34890OsAffx.17996.2.S1_at2/119+20330402..20331847expressed protein
LOC_Os09g34900Os.48834.1.S1_at11/119+20336705..20340024bile acid:sodium symporter family protein, putative, expressed
LOC_Os09g34910Os.11357.1.S1_at11/119+20342307..20346711DEAD/DEAH box helicase family protein, expressed
LOC_Os09g34920Os.5109.1.S1_at11/119+20348465..20350420glycosyl hydrolase family 29, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30141.1.S1_at--454--3171Chr09:20323067..20323091 (25 bp)
AATTGTCAAGTCTCCTGGCAGCGGC
LOC_Os09g34870
OsAffx.30141.1.S1_at--1121--1611Chr09:20323086..20323110 (25 bp)
AGCGGCCTATCTGAGGCTTTGCTTA
LOC_Os09g34870
OsAffx.30141.1.S1_at--757--10271Chr09:20323103..20323127 (25 bp)
TTTGCTTAGCTTCTGTTCATCAGAG
LOC_Os09g34870
OsAffx.30141.1.S1_at--29--5991Chr09:20323189..20323213 (25 bp)
GAGACACGGGCTATGTCATGCTCTC
LOC_Os09g34870
OsAffx.30141.1.S1_at--1068--2511Chr09:20323215..20323239 (25 bp)
AACTTGCTCTGTGCGAGTGGGCGAT
LOC_Os09g34870
OsAffx.30141.1.S1_at--147--5871Chr09:20323264..20323288 (25 bp)
GAGCCATGGCTGAGCAAGGTATCAA
LOC_Os09g34870
OsAffx.30141.1.S1_at--525--5331Chr09:20323289..20323313 (25 bp)
GAAGTCTCCTGGTTGTAGTTGGATC
LOC_Os09g34870
OsAffx.30141.1.S1_at--493--6871Chr09:20324546..20324570 (25 bp)
GTATTCCTCTAAATGTGTCCTTCAG
LOC_Os09g34870
OsAffx.30141.1.S1_at--1056--2211Chr09:20324606..20324630 (25 bp)
ACAAGTTGGTATCCAAGGTGGCCTT
LOC_Os09g34870
OsAffx.30141.1.S1_at--999--7712Chr09:20324622..20324646 (25 bp)
GGTGGCCTTGTTTAACTTATCTAAT
LOC_Os09g34870
OsAffx.30141.1.S1_at--981--631Chr09:20325148..20325172 (25 bp)
ATGCATTGGGTTTGCCAGTGGTCTT
LOC_Os09g34870
Target Sequence 
AATTGTCAAGTCTCCTGGCAGCGGCCTATCTGAGGCTTTGCTTAGCTTCTGTTCATCAGAGAACCTGGATTTCTGGGTTG
GAAGGAAGGTAGGAGACGATGTGGTGGCGAGGGCGCCTGCGAGAGACACGGGCTATGTCATGCTCTCCAACTTGCTCTGT
GCGAGTGGGCGATGGGATGAGGCTGAGAGGGTGAGGAGAGCCATGGCTGAGCAAGGTATCAAGAAGTCTCCTGGTTGTAG
TTGGATCGAAGTGAAAGGAAAAGTTAAGAAACAAGCATGTGAGAGTAAGCGATGTATTCCTCTAAATGTGTCCTTCAGAA
GGGCTTTGGTGGGGGATAACTTGAATGCGTGGTACAAGTTGGTATCCAAGGTGGCCTTGTTTAACTTATCTAATAGTCTA
ATATTTTTAGATGGGAAGCCAATGGAAAGGGAGTCTTTCTCGGTTTTTTTCAGGAGTATGCATTGGGTTTGCCAGTGGTC
TT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30141.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis