Browse Element(s) Details


Os.22786.1.S1_at

Description gb:AK119678.1
DB_XREF= gi:37989301
TID=Os.22786.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22786 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-188-E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-156-H08, full insert sequence.
FL= gb:AK119678.1 gb:AK120041.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3485011/11DNA polymerase delta subunit 4 family, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g34850Os.22786.1.S1_at11/119+20313087..20315233DNA polymerase delta subunit 4 family, putative, expressed
LOC_Os09g34860OsAffx.6480.1.S1_at11/119+20316429..20320515hydrolase, alpha/beta fold family protein, expressed
LOC_Os09g34870OsAffx.30141.1.S1_at11/119+20321406..20325291pentatricopeptide, putative, expressed
LOC_Os09g34880Os.5537.1.S1_s_at11/119+20326202..20329844expressed protein
LOC_Os09g34890Os.55378.1.S1_at11/119+20330402..20331847expressed protein
LOC_Os09g34890OsAffx.17996.2.S1_at2/119+20330402..20331847expressed protein
LOC_Os09g34900Os.48834.1.S1_at11/119+20336705..20340024bile acid:sodium symporter family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006260biological_processDNA replication
GO:0003891molecular_functiondelta DNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22786.1.S1_at--409--8531Chr09:20313601..20313625 (25 bp)
TGGACATGAAGTTTGGCCCTTGCAT
LOC_Os09g34850
Os.22786.1.S1_at--854--1631Chr09:20313559..20313583 (25 bp)
AGCGTTGGGAACGTGCTTCTGCCAT
LOC_Os09g34850
Os.22786.1.S1_at--537--3091Chr09:20313470..20313494 (25 bp)
AATAACAATGGTCCCTCCCTTGAGT
LOC_Os09g34850
Os.22786.1.S1_at--236--7011Chr09:20313406..20313430 (25 bp)
GTACTACTGTAAATCCTGCACTGTT
LOC_Os09g34850
Os.22786.1.S1_at--478--7991Chr09:20313334..20313358 (25 bp)
GGATGAATCCCTGTATTTCTTCTTA
LOC_Os09g34850
Os.22786.1.S1_at--169--191Chr09:20313320..20313344 (25 bp)
ATTTCTTCTTAGTCGAGGGCTTTGG
LOC_Os09g34850
Os.22786.1.S1_at--1049--1051Chr09:20313305..20313329 (25 bp)
AGGGCTTTGGGCTCAGTCAATGACC
LOC_Os09g34850
Os.22786.1.S1_at--382--691Chr09:20313286..20313310 (25 bp)
ATGACCTTGTGTTGTCGCAATCCTT
LOC_Os09g34850
Os.22786.1.S1_at--1091--6831Chr09:20313260..20313284 (25 bp)
GTTTCTGCTACGTTTTCTGACAATA
LOC_Os09g34850
Os.22786.1.S1_at--43--5031Chr09:20313233..20313257 (25 bp)
GCAGTGTTTCTTCAGTTTGTTCTTA
LOC_Os09g34850
Os.22786.1.S1_at--743--10271Chr09:20313153..20313177 (25 bp)
TTTGCCCCAAATCCAATGTTTGCCA
LOC_Os09g34850
Target Sequence 
TGGACATGAAGTTTGGCCCTTGCATNGGCGTTACTCGTNTTNAGCGTTGGGAACGTGCTTCTGCCATGGGTCTTCNCCCN
ACCACCTCATCTCAGGGATCTCTTACTGAACAATACTCATGCAGGCAATCACAATAACAATGGTCCCTCCCTTGAGTGCC
TCTGGGAGGGCAAAGTCTAGAACAAACAAATAGTCTGTACTACTGTAAATCCTGCACTGTTCATAGCTACTCGCTATGCC
TAGCCCTTCAAACCCCNCCCCAACTGATGGATGAATCCCTGTATTTCTTCTTAGTCGAGGGCTTTGGGCTCAGTCAATGA
CCTTGTGTTGTCGCAATCCTTTGTTTCTGCTACGTTTTCTGACAATACTGCAGTGTTTCTTCAGTTTGTTCTTAATCCTA
AGCTGTTACTAGTAAAAATAAGGAGAATGAGCTGGCAGTGTATNTCCAGTTTGCCCCAAATCCAATGTTTGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22786.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis