Browse Element(s) Details


Os.48834.1.S1_at

Description gb:AK101895.1
DB_XREF= gi:32987104
TID=Os.48834.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48834 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033070P09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033070P09, full insert sequence.
FL= gb:AK101895.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3490011/11bile acid:sodium symporter family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g34850Os.22786.1.S1_at11/119+20313087..20315233DNA polymerase delta subunit 4 family, putative, expressed
LOC_Os09g34860OsAffx.6480.1.S1_at11/119+20316429..20320515hydrolase, alpha/beta fold family protein, expressed
LOC_Os09g34870OsAffx.30141.1.S1_at11/119+20321406..20325291pentatricopeptide, putative, expressed
LOC_Os09g34880Os.5537.1.S1_s_at11/119+20326202..20329844expressed protein
LOC_Os09g34890Os.55378.1.S1_at11/119+20330402..20331847expressed protein
LOC_Os09g34890OsAffx.17996.2.S1_at2/119+20330402..20331847expressed protein
LOC_Os09g34900Os.48834.1.S1_at11/119+20336705..20340024bile acid:sodium symporter family protein, putative, expressed
LOC_Os09g34910Os.11357.1.S1_at11/119+20342307..20346711DEAD/DEAH box helicase family protein, expressed
LOC_Os09g34920Os.5109.1.S1_at11/119+20348465..20350420glycosyl hydrolase family 29, putative, expressed
LOC_Os09g34930Os.18431.1.S1_at11/119+20356971..20358605very-long-chain fatty acid condensing enzyme, putative, expressed
LOC_Os09g34940OsAffx.6481.1.S1_at11/119+20358979..20360200hypothetical protein
LOC_Os09g34950OsAffx.6482.1.S1_x_at11/119+20363468..20364613TCP family transcription factor containing protein, expressed
LOC_Os09g34950OsAffx.6482.1.S1_at11/119+20363468..20364613TCP family transcription factor containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006814biological_processsodium ion transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0008508molecular_functionbile acid:sodium symporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48834.1.S1_at--65--4871Chr09:20337569..20337593 (25 bp)
GCTTTAGCAAACAGGTTCTTCCCAG
LOC_Os09g34900
Os.48834.1.S1_at--1079--3431Chr09:20337149..20337171 (23 bp)
CAGTTGTGCTGATGTCCCTAATGGG
LOC_Os09g34900
Os.48834.1.S1_at--858--10271Chr09:20337123..20337147 (25 bp)
TTTGCTCTTGTTATGGTGTGGTCCA
LOC_Os09g34900
Os.48834.1.S1_at--555--7111Chr09:20337058..20337082 (25 bp)
GTCAGCTACAGAGCAGTGTTCAGTA
LOC_Os09g34900
Os.48834.1.S1_at--536--2491Chr09:20337031..20337055 (25 bp)
AACAGTGATGTACGCTCTTCTAAAA
LOC_Os09g34900
Os.48834.1.S1_at--647--6471Chr09:20336944..20336968 (25 bp)
GATACAAACTCTTCCAGTGCCAATA
LOC_Os09g34900
Os.48834.1.S1_at--795--751Chr09:20336915..20336939 (25 bp)
ATGTACACCATTGCTCTGAATCCTT
LOC_Os09g34900
Os.48834.1.S1_at--567--3991Chr09:20336875..20336899 (25 bp)
CGTGGTACTCTTTTCTTGTTCCTGT
LOC_Os09g34900
Os.48834.1.S1_at--552--6691Chr09:20336852..20336876 (25 bp)
GTTCTGAACTTAACCAAGACCTCAA
LOC_Os09g34900
Os.48834.1.S1_at--961--5831Chr09:20336835..20336859 (25 bp)
GACCTCAAGTTGTCCAAGTGCAGCT
LOC_Os09g34900
Os.48834.1.S1_at--448--2331Chr09:20336802..20336826 (25 bp)
AAAGTTGTCCAAGTGCAGCTAGGAT
LOC_Os09g34900
Target Sequence 
GCTTTAGCAAACAGGTTCTTCCCAGACCCACTAGTGGGAGTGCCCCCGGCTATATCAGTTGTGCTGATGTCCCTAATGGG
GTTTGCTCTTGTTATGGTGTGGTCCAAGAGAACAAAAGANTAGCTCATATTGAACTATTAAAGTCAGTCAGCTACAGAGC
AGTGTTCAGTATTAACAGTGATGTACGCTCTTCTAAAATCACCATGAAGAACAGCCAATCACAAAATTGGAGGTGAGGAC
GGCAGATGTTTGATGGCTAAGATACAAACTCTTCCAGTGCCAATAAACCATGTACACCATTGCTCTGAATCCTTCTCGCT
TTCTTTCGCCGTGGTACTCTTTTCTTGTTCCTGTTCTGAACTTAACCAAGACCTCAAGTTGTCCAAGTGCAGCTAGGATT
ATAAAGTTGTCCAAGTGCAGCTAGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48834.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis