Browse Element(s) Details


OsAffx.18019.1.S1_at

Description tigr:9637.m03123
TID=OsAffx.18019.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=mavicyanin. (vegetable marrow, summer squash
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3694011/11Plastocyanin-like domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36910OsAffx.18017.1.S1_at11/119+21291520..21293660bZIP transcription factor family protein, expressed
LOC_Os09g36920OsAffx.18018.1.S1_s_at11/119+21299441..21303732La domain containing protein, expressed
LOC_Os09g36930Os.14256.1.S1_a_at11/119+21309651..21311060aquaporin PIP2.8, putative, expressed
LOC_Os09g36940OsAffx.18019.1.S1_at11/119+21312642..21313340Plastocyanin-like domain containing protein, expressed
LOC_Os09g36950OsAffx.18020.1.S1_at11/119+21315300..21315704hypothetical protein
LOC_Os09g36960NANA9+21320178..21320582hypothetical protein
LOC_Os09g36970OsAffx.6499.1.S1_at11/119+21327366..21327821hypothetical protein
LOC_Os09g36970OsAffx.6499.1.S1_x_at11/119+21327366..21327821hypothetical protein
LOC_Os09g36976Os.24767.1.S1_at11/119+21330266..21332247expressed protein
LOC_Os09g36976OsAffx.30161.1.S1_s_at11/119+21330266..21332247expressed protein
LOC_Os09g36982Os.51421.1.S1_at10/119+21332768..21334610expressed protein
LOC_Os09g36990Os.10051.1.S1_at11/119+21336091..21338012expressed protein
LOC_Os09g37000Os.15703.1.S1_at11/119+21338282..2134172726S proteasome non-ATPase regulatory subunit 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0031225cellular_componentanchored to membrane
GO:0005489molecular_functionelectron transporter activity
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18019.1.S1_at--183--9851Chr09:21313220..21313244 (25 bp)
TACACGGTCGGCGACTCCGAAGGCT
LOC_Os09g36940
OsAffx.18019.1.S1_at--537--1751Chr09:21313177..21313201 (25 bp)
ACCTCGCCTGGTCGACGAAGTACAA
LOC_Os09g36940
OsAffx.18019.1.S1_at--253--8391Chr09:21313142..21313166 (25 bp)
GGCGACACTCTAGGTCAGTTCGTTC
LOC_Os09g36940
OsAffx.18019.1.S1_at--847--10071Chr09:21313132..21313156 (25 bp)
TAGGTCAGTTCGTTCGTTCGCTCGC
LOC_Os09g36940
OsAffx.18019.1.S1_at--1141--6571Chr09:21313103..21313127 (25 bp)
GATTCGCTCATGATCAGCATCTCGT
LOC_Os09g36940
OsAffx.18019.1.S1_at--125--8331Chr09:21313070..21313094 (25 bp)
GGCTCGATTCGATCTCCTGATGTTG
LOC_Os09g36940
OsAffx.18019.1.S1_at--729--6411Chr09:21313060..21313084 (25 bp)
GATCTCCTGATGTTGTTGCGAGCTG
LOC_Os09g36940
OsAffx.18019.1.S1_at--788--10791Chr09:21313048..21313072 (25 bp)
TTGTTGCGAGCTGTGCAGTGTTCAG
LOC_Os09g36940
OsAffx.18019.1.S1_at--206--5031Chr09:21313034..21313058 (25 bp)
GCAGTGTTCAGCTACGTGCAGCGGC
LOC_Os09g36940
OsAffx.18019.1.S1_at--110--9431Chr09:21312859..21312883 (25 bp)
TCGGCGGGATGAAGTTCTCCGTCGC
LOC_Os09g36940
OsAffx.18019.1.S1_at--552--4031Chr09:21312700..21312724 (25 bp)
CGTTGATGGTGCAGGTTTCTTGCCT
LOC_Os09g36940
Target Sequence 
TACACGGTCGGCGACTCCGAAGGCTGGACCATCGGCCCCAGCTACCTCGCCTGGTCGACGAAGTACAACTTCACCGCCGG
CGACACTCTAGGTCAGTTCGTTCGTTCGCTCGCCGTCGATTCGCTCATGATCAGCATCTCGTCTACCTCTGGCTCGATTC
GATCTCCTGATGTTGTTGCGAGCTGTGCAGTGTTCAGCTACGTGCAGCGGCAGCACGACGTGCTCCGGGTGTCGCAGGAC
GCGTTCCGGACGTGCGACCCGGCGAACCAGACCGTGCAGCGGTGGGCGTCGGGGCGCGACGTCGTGGAGCTCGCCGCGCC
GGGGAGCTACTACTTCATCTGCAACGTCAGCGGCCACTGCCTCGGCGGGATGAAGTTCTCCGTCGCCGTCGGCGAGCCGC
TGCCCCCGCCATCGCCGCCGCCGCCTCCCCCGCGTGCGCCCTTCCTGGCGCCGCCGCCGCCGCCGCCCGTCGGCTCCGGC
GCCGCTGCCGCGTCGTCGACGTGGCGGCGACGGCGGGTGGCGTTGATGGTGCAGGTTTCTTGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18019.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis