Browse Element(s) Details


OsAffx.18105.1.S1_at

Description gb:NM_194668.1
DB_XREF= gi:37530695
TID=OsAffx.18105.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNAa0049K09.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0344011/11U-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g03390Os.46736.1.S1_at11/1110+1428150..1429458Transferase family protein, expressed
LOC_Os10g03400OsAffx.12171.1.S1_at11/1110+1431712..1435496CRAL/TRIO, N-terminus family protein, expressed
LOC_Os10g03410OsAffx.30255.1.S1_at10/1110+1436508..1437543hypothetical protein
LOC_Os10g03420NANA10+1440099..1441250Leucine Rich Repeat family protein
LOC_Os10g03430OsAffx.20777.1.S1_at10/1110+1448842..1450087hypothetical protein
LOC_Os10g03430Os.6062.1.S1_at2/1110+1448842..1450087hypothetical protein
LOC_Os10g03440OsAffx.18105.1.S1_at11/1110+1452880..1454262U-box domain containing protein
LOC_Os10g03450NANA10+1463842..1464354hypothetical protein
LOC_Os10g03460Os.47463.1.S1_x_at5/1110+1466780..1470477transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g03460Os.14491.2.S1_x_at4/1110+1466780..1470477transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g03470NANA10+1473047..1476379transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0042828biological_processresponse to pathogen
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18105.1.S1_at--1061--4591Chr10:1453664..1453688 (25 bp)
GCGACAACCTTGACGGGATCATCGA
LOC_Os10g03440
OsAffx.18105.1.S1_at--731--7951Chr10:1453679..1453703 (25 bp)
GGATCATCGAGGTGTTGGTGAACAC
LOC_Os10g03440
OsAffx.18105.1.S1_at--217--8391Chr10:1453843..1453867 (25 bp)
GGCGACCGGAGCACGGCCGAGAAAG
LOC_Os10g03440
OsAffx.18105.1.S1_at--437--4791Chr10:1454004..1454028 (25 bp)
GCTCCACCGCATCTGCAAGAAATGG
LOC_Os10g03440
OsAffx.18105.1.S1_at--370--1791Chr10:1454009..1454033 (25 bp)
ACCGCATCTGCAAGAAATGGCACGA
LOC_Os10g03440
OsAffx.18105.1.S1_at--1016--2951Chr10:1454024..1454048 (25 bp)
AATGGCACGACGGTGATGACGACGA
LOC_Os10g03440
OsAffx.18105.1.S1_at--713--4571Chr10:1454102..1454126 (25 bp)
GCGCGTTCCAGAAGGTGATGATGCT
LOC_Os10g03440
OsAffx.18105.1.S1_at--322--371Chr10:1454147..1454171 (25 bp)
ATGCAACCAAGGAGAAGGCGACTGA
LOC_Os10g03440
OsAffx.18105.1.S1_at--220--2691Chr10:1454179..1454203 (25 bp)
AAGCTGATGATCAAGTATGAAACTA
LOC_Os10g03440
OsAffx.18105.1.S1_at--792--6171Chr10:1454204..1454228 (25 bp)
GAGGAGGAGCTCACTGCATTGACGC
LOC_Os10g03440
OsAffx.18105.1.S1_at--314--971Chr10:1454208..1454232 (25 bp)
AGGAGCTCACTGCATTGACGCCATG
LOC_Os10g03440
Target Sequence 
GCGACAACCTTGACGGGATCATCGAGGTGTTGGTGAACACGATCCGGGACCCGATCTCCCCTCAGGCCACCAAGGCCTCC
CTCGTCGCCGCGTACCACCTCGCGCTCGCCGACGGCCACGCTGCGGCGCGCCTCGCGGAGGCCGGCCTCGTGCCGTCCCT
CGTCGAGCTCCTCATCGACGGCGACCGGAGCACGGCCGAGAAAGCGCTCGCCGCGCTCGACGCGACGCTGGCGTCCGAGG
CCGGCAGGGCGCGCGCCCAAGCCGACGCGCTCGCCGTGCCGGTGCTCGTCAAGAAGATGTTCCGCGTGTCCGACACGGCC
ACCGAGCTCGTCGTCTCGGCGCTCCACCGCATCTGCAAGAAATGGCACGACGGTGATGACGACGAGGTGGGGTCGCCGGC
GGCGAGGCGGAGCGCCGTCGTGGAGGCGGTGCAGGTGGGCGCGTTCCAGAAGGTGATGATGCTGCTGCAGGTTGGGTGCA
GGGATGCAACCAAGGAGAAGGCGACTGAGCTGCTCAAGCTGATGATCAAGTATGAAACTAGAGGAGGAGCTCACTGCATT
GACGCCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18105.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis