Browse Element(s) Details


OsAffx.18121.1.S1_at

Description tigr:9638.m00330
TID=OsAffx.18121.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0421011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04170Os.48140.1.A1_at10/1110+1922659..1929564hypothetical protein
LOC_Os10g04180Os.18720.1.S1_at10/1110+1933447..1936961NB-ARC domain containing protein, expressed
LOC_Os10g04190Os.46733.1.S1_at11/1110+1938793..1939827disease resistance protein RPM1 homolog, putative, expressed
LOC_Os10g04210OsAffx.18121.1.S1_at11/1110+1945918..1948038hypothetical protein
LOC_Os10g04220OsAffx.20354.1.S1_at1/1110+1952461..1954923retrotransposon protein, putative, unclassified
LOC_Os10g04230NANA10+1955253..1957921retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g04240NANA10+1958414..1961373retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g04250OsAffx.14826.1.S1_at1/1110+1964704..1967815Transposable element protein, putative, Retrotrans_gag
LOC_Os10g04260OsAffx.30273.1.S1_at11/1110+1971335..1973334hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18121.1.S1_at--364--2891Chr10:1946126..1946150 (25 bp)
AAGGATGGAATTCACACCCCTTCTG
LOC_Os10g04210
OsAffx.18121.1.S1_at--1095--7851Chr10:1946456..1946480 (25 bp)
GGTTTGGTAAGCCTCCACTAAGATC
LOC_Os10g04210
OsAffx.18121.1.S1_at--671--2971Chr10:1946508..1946532 (25 bp)
AATGGTCATCCAACAATCACGTGCT
LOC_Os10g04210
OsAffx.18121.1.S1_at--983--3331Chr10:1946525..1946549 (25 bp)
CACGTGCTCTGTTGGATCTCAAGAA
LOC_Os10g04210
OsAffx.18121.1.S1_at--1032--1471Chr10:1946546..1946570 (25 bp)
AGAATTCTACAATGCCACCTGGGAC
LOC_Os10g04210
OsAffx.18121.1.S1_at--762--10871Chr10:1946572..1946596 (25 bp)
TTGGCTCAAGTGTCGGCATCATGTC
LOC_Os10g04210
OsAffx.18121.1.S1_at--306--1751Chr10:1947524..1947711 (25 bp)
ACCTCACCATCTCATGTGTTGCATT
LOC_Os10g04210
OsAffx.18121.1.S1_at--1024--8671Chr10:1947704..1947725 (22 bp)
TGTGTTGCATTTCGAGCTTGTCTTC
LOC_Os10g04210
OsAffx.18121.1.S1_at--1086--7131Chr10:1947720..1947744 (25 bp)
GTCTTCGATCTTGTGCTGCTCAAAA
LOC_Os10g04210
OsAffx.18121.1.S1_at--939--8551Chr10:1947754..1947778 (25 bp)
TGGAGGTTGCTTACATCCCACAAGA
LOC_Os10g04210
OsAffx.18121.1.S1_at--402--3211Chr10:1947984..1948008 (25 bp)
CAAGGCACTCCTGTTATTGTCATGG
LOC_Os10g04210
Target Sequence 
AAGGATGGAATTCACACCCCTTCTGCCAAGGTAACGGAGGTAAGATCCCTAGTAAACCCAAGGAACCTATCAAATCTGTA
AATCTAGTCACAACGAGGTTTGGTAAGCCTCCACTAAGATCGAGGTATGGTCATCCAAGAAGGGAGACAATGGTCATCCA
ACAATCACGTGCTCTGTTGGATCTCAAGAATTCTACAATGCCACCTGGGACCTTGGCTCAAGTGTCGGCATCATGTCCAA
GTTTGAATTTGAAAGAGAGTGTGCAGAAGGAGGAAGAGGGGGGTGGACAGACCCATGAAGCCTCCACCTCACCATCTCAT
GTGTTGCATTTCGAGCTTGTCTTCGATCTTGTGCTGCTCAAAAGAACATTTGTGGAGGTTGCTTACATCCCACAAGAACA
GTTTGTGAAAGATGAACCCATTCAACAAGATATCCAAGAAGGTGCGAGAGGCCACAATCAAGAGCTCATCAAGGCACTCC
TGTTATTGTCATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18121.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis