Browse Element(s) Details


OsAffx.18168.1.S1_at

Description tigr:9638.m00669
TID=OsAffx.18168.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0752011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g07480Os.7212.1.S1_at11/1110+3963276..3967603expressed protein
LOC_Os10g07500OsAffx.30333.1.S1_at11/1110+3969758..3971364hypothetical protein
LOC_Os10g07510OsAffx.18167.1.S1_at11/1110+3975935..3977575LOB domain protein 31, putative, expressed
LOC_Os10g07520OsAffx.18168.1.S1_at11/1110+3988655..3989293hypothetical protein
LOC_Os10g07530NANA10+3997301..4000226transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g07966OsAffx.18918.1.S1_at1/1110+4009275..4011681hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18168.1.S1_at--344--3511Chr10:3989226..3989250 (25 bp)
CATGGGAGAGATGGCACGGCACACA
LOC_Os10g07520
OsAffx.18168.1.S1_at--123--8251Chr10:3989209..3989233 (25 bp)
GGCACACAGCAAGCCTACGAGCTAG
LOC_Os10g07520
OsAffx.18168.1.S1_at--741--2651Chr10:3989199..3989223 (25 bp)
AAGCCTACGAGCTAGATGAGACGAT
LOC_Os10g07520
OsAffx.18168.1.S1_at--599--4191Chr10:3989160..3989184 (25 bp)
CCCCGGCTAGGGAGGTTGCAGATCT
LOC_Os10g07520
OsAffx.18168.1.S1_at--967--4691Chr10:3989105..3989129 (25 bp)
GCGGCTAGATCTGACATCTCCAAGT
LOC_Os10g07520
OsAffx.18168.1.S1_at--286--471Chr10:3989090..3989114 (25 bp)
ATCTCCAAGTCGTATCGGCCCAGGG
LOC_Os10g07520
OsAffx.18168.1.S1_at--1074--4171Chr10:3988802..3989096 (25 bp)
CCCAGGGTTCCTGGTGTGCACTGTG
LOC_Os10g07520
OsAffx.18168.1.S1_at--297--2211Chr10:3988766..3988790 (25 bp)
ACAACGACGGGCATGGATGCTGACG
LOC_Os10g07520
OsAffx.18168.1.S1_at--684--7971Chr10:3988752..3988776 (25 bp)
GGATGCTGACGGTGCCCAATTGCTC
LOC_Os10g07520
OsAffx.18168.1.S1_at--138--1931Chr10:3988744..3988768 (25 bp)
ACGGTGCCCAATTGCTCTGACATGG
LOC_Os10g07520
OsAffx.18168.1.S1_at--818--4071Chr10:3988708..3988732 (25 bp)
CGAGATGGCGGCACAGTGAGCTACC
LOC_Os10g07520
Target Sequence 
CATGGGAGAGATGGCACGGCACACAGCAAGCCTACGAGCTAGATGAGACGATGGCCGGCGGCGCACCCCCGGCTAGGGAG
GTTGCAGATCTAGAGCTGCCACAACCGGATCCGGTGCCCCCGCGGCTAGATCTGACATCTCCAAGTCGTATCGGCCCAGG
GTTCCTGGTGTGCACTGTGGAGGGTGGAGGACAACGACGGGCATGGATGCTGACGGTGCCCAATTGCTCTGACATGGGCG
ATGACAGCCGAGATGGCGGCACAGTGAGCTACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18168.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis