Browse Element(s) Details


OsAffx.18229.1.S1_x_at

Description gb:NM_195319.1
DB_XREF= gi:37531997
TID=OsAffx.18229.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0005F01.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1172011/11hypothetical protein
LOC_Os06g301001/11transposon protein, putative, unclassified
LOC_Os10g095291/11hypothetical protein
LOC_Os09g115001/11retrotransposon protein, putative, unclassified
LOC_Os06g187701/11hypothetical protein
LOC_Os04g530401/11retrotransposon protein, putative, unclassified, expressed
LOC_Os11g111601/11retrotransposon protein, putative, unclassified
LOC_Os06g429401/11retrotransposon protein, putative, unclassified
LOC_Os09g105401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g254301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g205001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g191141/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g178301/11transposon protein, putative, Mutator sub-class
LOC_Os08g155501/11hypothetical protein
LOC_Os06g032501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g149001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g111701/11hypothetical protein
LOC_Os04g432401/11hypothetical protein
LOC_Os11g077301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g355201/11retrotransposon protein, putative, unclassified
LOC_Os05g158401/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g11680NANA10+6215518..6221203retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11690NANA10+6222373..6229043retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11696Os.45173.1.S1_x_at1/1110+6231780..6234123retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11702NANA10+6234388..6238815retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11710Os.47999.3.S1_x_at11/1110+6244035..6244523retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11710OsAffx.20691.1.S1_x_at1/1110+6244035..6244523retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11720OsAffx.18229.1.S1_x_at11/1110+6245410..6246039hypothetical protein
LOC_Os10g11720OsAffx.18229.1.S1_at11/1110+6245410..6246039hypothetical protein
LOC_Os10g11730Os.46275.1.S1_at10/1110+6249730..6251992expressed protein
LOC_Os10g11740NANA10+6257441..6259614hypothetical protein
LOC_Os10g11750Os.46860.2.S1_at11/1110+6262227..6275459Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os10g11750Os.46860.2.S1_x_at11/1110+6262227..6275459Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os10g11750Os.46860.1.S1_at10/1110+6262227..6275459Protease inhibitor/seed storage/LTP family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18229.1.S1_x_at--701--2523Chr12:13278984..13279006 (23 bp)
ATATCCGGTCTACGAGTATCACTCG
NONE
OsAffx.18229.1.S1_x_at--6--9271Chr10:6245758..6245782 (25 bp)
TCCTCCAATGACTGGAAATGAGAAT
LOC_Os10g11720
OsAffx.18229.1.S1_x_at--179--5431Chr10:6245722..6245746 (25 bp)
GAACCAAGGCAACTCCATGTCGAAA
LOC_Os10g11720
OsAffx.18229.1.S1_x_at--733--5973Chr04:25365582..25365602 (21 bp)
GAGAACGGATTACCGACTACACCCA
LOC_Os04g43240
OsAffx.18229.1.S1_x_at--689--611Chr10:6245636..6245660 (25 bp)
ATGCGGCCAAGCCTTATCCTTCTGA
LOC_Os10g11720
OsAffx.18229.1.S1_x_at--1118--4371Chr10:6245630..6245654 (25 bp)
CCAAGCCTTATCCTTCTGACATAAA
LOC_Os10g11720
OsAffx.18229.1.S1_x_at--1016--10571Chr10:6245617..6245641 (25 bp)
TTCTGACATAAATCACGGGCTGACA
LOC_Os10g11720
OsAffx.18229.1.S1_x_at--222--9691Chr10:6245605..6245629 (25 bp)
TCACGGGCTGACAAAGATGACTTCC
LOC_Os10g11720
OsAffx.18229.1.S1_x_at--270--5131Chr10:6245483..6245507 (25 bp)
GCAAAGACCGTGGAATTCTGTCACA
LOC_Os10g11720
OsAffx.18229.1.S1_x_at--41--1791Chr10:6245477..6245501 (25 bp)
ACCGTGGAATTCTGTCACATCCTGA
LOC_Os10g11720
OsAffx.18229.1.S1_x_at--56--1061171Chr12:12653697..12653719 (23 bp)
TTCTGTCACATCCTGATTTTCGTTT
NONE
Target Sequence 
ATATCCGGTCTACGAGTATCACTCGTCGACAGTGGCGCGCCAGGTAGAGGCATCTGGTACTCAAGGTTCTACTACTATGC
CATCCAGCTTCGTCGACAACAACGTCAACACCAGCTTCAGCCAAGCACTCCCTACTTCAACAATGCTGGTATGGACTCAT
GTCGGCGAAATTGTCTTCCCGGTTTACACCACGATGCCGATCTCAACCGGTCCTCCAATGACTGGAAATGAGAATGCAGT
GGCTACGAACCAAGGCAACTCCATGTCGAAAAATCCACCCGTCGAAATGGAGAACGGATTACCGACTACACCCAAGCTCG
GGAAGGATTCTGATGCGGCCAAGCCTTATCCTTCTGACATAAATCACGGGCTGACAAAGATGACTTCCGAAGCCACCAGG
TCTTGGTGTCCTATCCACAAAACCAAGAAACACACCCTTCAAGATTGCTGGGTTTTTCTCAACGTCCGTGCTGAAATTCG
CGCCTGCAAAGACCGTGGAATTCTGTCACATCCTGATTTTCGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18229.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis