Browse Element(s) Details


OsAffx.18237.1.S1_at

Description tigr:9638.m01095
TID=OsAffx.18237.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative glucosyltransferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1212011/11glucosyltransferase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g12080Os.17812.1.S1_at3/1110+6480765..6481487Cytochrome P450 98A1, putative
LOC_Os10g12080Os.17812.1.S1_x_at1/1110+6480765..6481487Cytochrome P450 98A1, putative
LOC_Os10g12090NANA10+6486179..6486427hypothetical protein
LOC_Os10g12110NANA10+6490392..6493312transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g12120OsAffx.18237.1.S1_at11/1110+6495066..6496856glucosyltransferase, putative
LOC_Os10g12130OsAffx.8801.1.S1_at3/1110+6497821..6505115expressed protein
LOC_Os10g12140OsAffx.12861.2.S1_x_at11/1110+6514664..6519216hAT family dimerisation domain containing protein
LOC_Os10g12140OsAffx.12861.3.S1_x_at9/1110+6514664..6519216hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18237.1.S1_at--869--10751Chr10:6495304..6495328 (25 bp)
TTGACCGGCTGTTGCTGGAGCAGAA
LOC_Os10g12120
OsAffx.18237.1.S1_at--516--7211Chr10:6496487..6496511 (25 bp)
GTCGTTGGAGCAATACGTCCCAGGT
LOC_Os10g12120
OsAffx.18237.1.S1_at--932--9311Chr10:6496504..6496528 (25 bp)
TCCCAGGTCTCTCATCAGTTAGATT
LOC_Os10g12120
OsAffx.18237.1.S1_at--235--251Chr10:6496534..6496558 (25 bp)
ATATCAAGACCTTCCGTGCAAGCTG
LOC_Os10g12120
OsAffx.18237.1.S1_at--944--5371Chr10:6496581..6496605 (25 bp)
GAAGAAGCGCTCGTCAACGTGCGTA
LOC_Os10g12120
OsAffx.18237.1.S1_at--907--9831Chr10:6496604..6496628 (25 bp)
TAAAGCACAGTGTATCCTCTTCACC
LOC_Os10g12120
OsAffx.18237.1.S1_at--240--5911Chr10:6496638..6496662 (25 bp)
GAGCTCGAACCGGAAATCATCAACA
LOC_Os10g12120
OsAffx.18237.1.S1_at--1098--291Chr10:6496665..6496689 (25 bp)
ATAGCAGAAACGGTTCCATGCCCCA
LOC_Os10g12120
OsAffx.18237.1.S1_at--921--5451Chr10:6496727..6496751 (25 bp)
GAACGGCGACGACCCAGGCAAGATT
LOC_Os10g12120
OsAffx.18237.1.S1_at--878--1731Chr10:6496765..6496789 (25 bp)
ACCATAGCTGGCTGGATGCACGGCA
LOC_Os10g12120
OsAffx.18237.1.S1_at--175--3491Chr10:6496788..6496812 (25 bp)
CAGGAGAACTCCGTGCTGTATGTCT
LOC_Os10g12120
Target Sequence 
TTGACCGGCTGTTGCTGGAGCAGAAGTGGAGGCCGGACGCCATTGTGGCCGACACCTACCTGGCGTGGGGCGTGGCGGTC
GGCGCGCGCCGTGGGATCCCGGTGTGTTCGCTGTGGACCATGGCCGCCACGTTCTTCTGGGCGCTCTACCACTTCAACCT
CTGGCCGCCGGTGGATGGTAGCGAAAGCGAACAAGAGCTAAGCTGCAGGTCGTTGGAGCAATACGTCCCAGGTCTCTCAT
CAGTTAGATTGTCCGATATCAAGACCTTCCGTGCAAGCTGGGAGCGGCCAATGAAAATAGCAGAAGAAGCGCTCGTCAAC
GTGCGTAAAGCACAGTGTATCCTCTTCACCTCCTTCCACGAGCTCGAACCGGAAATCATCAACAGAATAGCAGAAACGGT
TCCATGCCCCATATACCCGATCGGCCCTTCGATTCCGCACTTGCCACGGAACGGCGACGACCCAGGCAAGATTGGCAACG
ATGATCACCATAGCTGGCTGGATGCACGGCAGGAGAACTCCGTGCTGTATGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18237.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis