Browse Element(s) Details


OsAffx.18325.1.S1_at

Description tigr:9638.m01762
TID=OsAffx.18325.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2116010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g21150NANA10+10439035..10439848hypothetical protein
LOC_Os10g21160OsAffx.18325.1.S1_at10/1110+10448354..10448969hypothetical protein
LOC_Os10g21160OsAffx.30891.1.S1_x_at2/1110+10448354..10448969hypothetical protein
LOC_Os10g21170OsAffx.18326.1.S1_at11/1110+10452302..10452694hypothetical protein
LOC_Os10g21180OsAffx.30472.1.S1_at11/1110+10455384..10455695hypothetical protein
LOC_Os10g21190NANA10+10457616..10459725hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18325.1.S1_at--78--8251Chr10:10448915..10448939 (25 bp)
GGCAGGACGCCAGGCAAGCGGCTCT
LOC_Os10g21160
OsAffx.18325.1.S1_at--605--5011Chr10:10448914..10448938 (25 bp)
GCAGGACGCCAGGCAAGCGGCTCTT
LOC_Os10g21160
OsAffx.18325.1.S1_at--600--9511Chr10:10448875..10448899 (25 bp)
TCTCTGGTACCGTCAGGAGAGTGGA
LOC_Os10g21160
OsAffx.18325.1.S1_at--188--9371Chr10:10448873..10448897 (25 bp)
TCTGGTACCGTCAGGAGAGTGGACC
LOC_Os10g21160
OsAffx.18325.1.S1_at--256--3911Chr10:10448872..10448896 (25 bp)
CTGGTACCGTCAGGAGAGTGGACCC
LOC_Os10g21160
OsAffx.18325.1.S1_at--259--9971Chr10:10448869..10448892 (24 bp)
TACCGTCAGGAGAGTGGACCCGAGA
LOC_Os10g21160
OsAffx.18325.1.S1_at--1044--9631Chr10:10448457..10448887 (25 bp)
TCAGGAGAGTGGACCCGAGAGTTCA
LOC_Os10g21160
OsAffx.18325.1.S1_at--416--6011Chr10:10448453..10448883 (25 bp)
GAGAGTGGACCCGAGAGTTCATCCG
LOC_Os10g21160
OsAffx.18325.1.S1_at--1118--1331Chr10:10448452..10448882 (25 bp)
AGAGTGGACCCGAGAGTTCATCCGC
LOC_Os10g21160
OsAffx.18325.1.S1_at--975--6111NONE
GAGTGGACCCGAGAGTTCATCCGCA
NONE
OsAffx.18325.1.S1_at--352--1091Chr10:10448450..10448880 (25 bp)
AGTGGACCCGAGAGTTCATCCGCAA
LOC_Os10g21160
Target Sequence 
GGCAGGACGCCAGGCAAGCGGCTCTTCCCCACTCTCTCTCTCTCTGGTACCGTCAGGAGAGTGGACCCGAGAGTTCATCC
GCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18325.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis