Browse Element(s) Details


OsAffx.18419.1.S1_at

Description tigr:9638.m02286
TID=OsAffx.18419.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g267509/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26730Os.11312.1.S1_s_at11/1110+13623053..13626656exonuclease family protein, putative, expressed
LOC_Os10g26730Os.11312.1.S1_at11/1110+13623053..13626656exonuclease family protein, putative, expressed
LOC_Os10g26740OsAffx.6777.1.S1_at10/1110+13633970..13635010hypothetical protein
LOC_Os10g26750OsAffx.18419.1.S1_at9/1110+13647037..13648029hypothetical protein
LOC_Os10g26760OsAffx.32056.1.S1_x_at9/1110+13665030..13670546transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g26770OsAffx.10637.3.S1_s_at11/1110+13671846..13675532transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g26770OsAffx.10637.4.S1_s_at11/1110+13671846..13675532transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g26770OsAffx.10637.1.S1_s_at10/1110+13671846..13675532transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18419.1.S1_at--909--7272Chr05:25205507..25205531 (25 bp)
GTGCCTAAAGCTCAGGCAGCAGCCG
NONE
OsAffx.18419.1.S1_at--484--3732Chr05:25205511..25205535 (25 bp)
CTAAAGCTCAGGCAGCAGCCGAGCA
NONE
OsAffx.18419.1.S1_at--530--51NONE
ATTGAGTGGTCGCTAATCCTCACAG
NONE
OsAffx.18419.1.S1_at--188--8591NONE
TGGTCGCTAATCCTCACAGAATTGG
NONE
OsAffx.18419.1.S1_at--176--9771Chr10:13647288..13647310 (23 bp)
TAATCCTCACAGAATTGGAGATGAT
LOC_Os10g26750
OsAffx.18419.1.S1_at--694--8031Chr10:13647272..13647296 (25 bp)
GGAGATGATGATTCAGCTTCGATGG
LOC_Os10g26750
OsAffx.18419.1.S1_at--96--8871Chr10:13647267..13647291 (25 bp)
TGATGATTCAGCTTCGATGGGAGCT
LOC_Os10g26750
OsAffx.18419.1.S1_at--883--6311Chr10:13647127..13647263 (25 bp)
GATGACAAAGCATGATGAACTACCA
LOC_Os10g26750
OsAffx.18419.1.S1_at--562--9971Chr10:13647107..13647131 (25 bp)
TACCAAAAGACAGTAGCAGAATGTT
LOC_Os10g26750
OsAffx.18419.1.S1_at--885--7991Chr10:13647081..13647105 (25 bp)
GGATGTATATTAGCAACAACCATTG
LOC_Os10g26750
OsAffx.18419.1.S1_at--590--3271Chr10:13647068..13647092 (25 bp)
CAACAACCATTGTCTCTAACCAACA
LOC_Os10g26750
Target Sequence 
GTGCCTAAAGCTCAGGCAGCAGCCGAGCAGGACGGGCTGGACGGCCGANNATGCNGCCACAAGACGGGAGGAGTCNATTG
AGTGGTCGCTAATCCTCACAGAATTGGAGATGATGATTCAGCTTCGATGGGAGCTGATGATGACAAAGCATGATGAACTA
CCAAAAGACAGTAGCAGAATGTTAGGATGTATATTAGCAACAACCATTGTCTCTAACCAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18419.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis