Browse Element(s) Details


OsAffx.18523.1.S1_at

Description tigr:9638.m03096
TID=OsAffx.18523.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3508011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35030Os.7861.2.S1_s_at11/1110+18358228..18363727IAP100, putative, expressed
LOC_Os10g35030Os.51767.1.S1_at2/1110+18358228..18363727IAP100, putative, expressed
LOC_Os10g35040Os.46331.1.S1_s_at11/1110+18367714..18370483Protein kinase domain containing protein, expressed
LOC_Os10g35050Os.2544.1.S1_s_at11/1110+18371554..18372931Aquaporin TIP3.1, putative, expressed
LOC_Os10g35050OsAffx.9909.2.S1_x_at2/1110+18371554..18372931Aquaporin TIP3.1, putative, expressed
LOC_Os10g35060Os.2540.1.S1_at11/1110+18373563..18376629Ser/Thr protein phosphatase family protein, expressed
LOC_Os10g35070Os.17491.1.S1_at5/1110+18378181..18381958Alpha-galactosidase precursor, putative, expressed
LOC_Os10g35080OsAffx.18523.1.S1_at11/1110+18381976..18385830hypothetical protein
LOC_Os10g35090Os.46382.2.S1_x_at11/1110+18388465..18392252Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35090Os.46382.1.S1_at11/1110+18388465..18392252Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35090Os.46382.2.S2_x_at11/1110+18388465..18392252Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35090Os.46382.4.S1_x_at2/1110+18388465..18392252Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35100Os.10498.1.S1_at11/1110+18394352..18395856expressed protein
LOC_Os10g35110Os.7805.1.S1_a_at11/1110+18403684..18411717Alpha-galactosidase precursor, putative, expressed
LOC_Os10g35110OsAffx.6874.1.S1_at1/1110+18403684..18411717Alpha-galactosidase precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18523.1.S1_at--133--4411Chr10:18385721..18385745 (25 bp)
GCCACGCACAACATCACGAGAAGCC
LOC_Os10g35080
OsAffx.18523.1.S1_at--811--4411Chr10:18385691..18385715 (25 bp)
GCCATCAGAGCGCATGCCTTAGTCG
LOC_Os10g35080
OsAffx.18523.1.S1_at--1044--391Chr10:18385688..18385712 (25 bp)
ATCAGAGCGCATGCCTTAGTCGCCG
LOC_Os10g35080
OsAffx.18523.1.S1_at--210--1371Chr10:18385685..18385709 (25 bp)
AGAGCGCATGCCTTAGTCGCCGCCG
LOC_Os10g35080
OsAffx.18523.1.S1_at--915--1891Chr10:18385643..18385667 (25 bp)
ACGTCGTCCGTACCGGCGTATCTGG
LOC_Os10g35080
OsAffx.18523.1.S1_at--905--6951Chr10:18385634..18385658 (25 bp)
GTACCGGCGTATCTGGCTCCCGTCT
LOC_Os10g35080
OsAffx.18523.1.S1_at--462--7571Chr10:18385493..18385621 (25 bp)
GGGCGGTGCGTCATACAACACGAGC
LOC_Os10g35080
OsAffx.18523.1.S1_at--1120--7291Chr10:18385488..18385512 (25 bp)
GTGCGTCATACAACACGAGCTGGCC
LOC_Os10g35080
OsAffx.18523.1.S1_at--892--9591Chr10:18385483..18385507 (25 bp)
TCATACAACACGAGCTGGCCGGCTT
LOC_Os10g35080
OsAffx.18523.1.S1_at--845--4911Chr10:18385462..18385486 (25 bp)
GCTTCGCTTCGGTCGTGGATCTCCA
LOC_Os10g35080
OsAffx.18523.1.S1_at--1099--10611Chr10:18385455..18385479 (25 bp)
TTCGGTCGTGGATCTCCACTGTCAC
LOC_Os10g35080
Target Sequence 
GCCACGCACAACATCACGAGAAGCCCCCTCGCCATCAGAGCGCATGCCTTAGTCGCCGCCGCCTCCACCACGCCGCACAC
GTCGTCCGTACCGGCGTATCTGGCTCCCGTCTCCCCCACAAGCGGGGCGGTGCGTCATACAACACGAGCTGGCCGGCTTC
GCTTCGGTCGTGGATCTCCACTGTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18523.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis