Browse Element(s) Details


OsAffx.18582.1.S1_at

Description tigr:9638.m03585
TID=OsAffx.18582.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative ubiquitin protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3962011/11Ubiquitin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39560OsAffx.6916.1.S1_at11/1110+20814007..20817218Serine carboxypeptidase family protein
LOC_Os10g39570OsAffx.30727.1.S1_at8/1110+20824528..20826500expressed protein
LOC_Os10g39590OsAffx.20160.1.S1_x_at11/1110+20833157..20833402Nedd8-like protein RUB3 precursor, putative, expressed
LOC_Os10g39590OsAffx.20160.1.S1_at11/1110+20833157..20833402Nedd8-like protein RUB3 precursor, putative, expressed
LOC_Os10g39600OsAffx.30729.1.S1_at8/1110+20835581..20836950hypothetical protein
LOC_Os10g39610NANA10+20838807..20839543expressed protein
LOC_Os10g39620Os.2935.1.S1_at11/1110+20839650..20844885Ubiquitin family protein, expressed
LOC_Os10g39620OsAffx.18582.1.S1_at11/1110+20839650..20844885Ubiquitin family protein, expressed
LOC_Os10g39620Os.2935.2.S1_x_at11/1110+20839650..20844885Ubiquitin family protein, expressed
LOC_Os10g39640Os.2938.1.S1_at11/1110+20849853..20851618Expansin-like 3 precursor, putative, expressed
LOC_Os10g39640Os.2938.1.S1_x_at11/1110+20849853..20851618Expansin-like 3 precursor, putative, expressed
LOC_Os10g39660Os.47369.1.A1_at10/1110+20860285..20861389expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006512biological_processubiquitin cycle
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18582.1.S1_at--995--6971Chr10:20841483..20841507 (25 bp)
GTACCTGAATTGCATCTAGCTCATT
LOC_Os10g39620
OsAffx.18582.1.S1_at--1013--10291Chr10:20841413..20841437 (25 bp)
TTTCTTGATTCAGGGATGGTAGCCA
LOC_Os10g39620
OsAffx.18582.1.S1_at--277--8231Chr10:20841384..20841408 (25 bp)
GGCAATGCGACAGGTATTTTCTCTT
LOC_Os10g39620
OsAffx.18582.1.S1_at--236--10431Chr10:20841266..20841290 (25 bp)
TTATCTTTTAGTGGTGGTTCGTTCT
LOC_Os10g39620
OsAffx.18582.1.S1_at--284--7891Chr10:20841251..20841275 (25 bp)
GGTTCGTTCTAGCACCAATAGTTGC
LOC_Os10g39620
OsAffx.18582.1.S1_at--92--3111Chr10:20841235..20841259 (25 bp)
AATAGTTGCCTTTCTTTCACTGCTT
LOC_Os10g39620
OsAffx.18582.1.S1_at--613--3591Chr10:20841213..20841237 (25 bp)
CTTGGTTGACCTGTATTAGTTCTTC
LOC_Os10g39620
OsAffx.18582.1.S1_at--34--10451Chr10:20841198..20841222 (25 bp)
TTAGTTCTTCAAGATTTCCGTTCTT
LOC_Os10g39620
OsAffx.18582.1.S1_at--865--10291Chr10:20841184..20841208 (25 bp)
TTTCCGTTCTTCCATAAGGCCATTA
LOC_Os10g39620
OsAffx.18582.1.S1_at--256--6651Chr10:20841123..20841147 (25 bp)
GTTGATTCTTGACACTACCTTATTG
LOC_Os10g39620
OsAffx.18582.1.S1_at--942--6391Chr10:20841031..20841055 (25 bp)
GATCGATATGGTGCGACCGTGCGAC
LOC_Os10g39620
Target Sequence 
GTACCTGAATTGCATCTAGCTCATTTATACTGTATTTCTTTCATTATGTGTTTGTTAATTATCTTTTGATTTTCTTGATT
CAGGGATGGTAGCCAAGGAGGCAATGCGACAGGTATTTTCTCTTGATTGTTTTTTTAATATGCACCATCTAATATCTTTT
CTTGTTTTAAGATGGATTAGTATGTCAGGTTTTACATAAGTTTTAGTGCGTACTGAGTTATCTTTTAGTGGTGGTTCGTT
CTAGCACCAATAGTTGCCTTTCTTTCACTGCTTGGTTGACCTGTATTAGTTCTTCAAGATTTCCGTTCTTCCATAAGGCC
ATTACATTATATAAACACATTATGATGATTATTACTAGTGGTTGATTCTTGACACTACCTTATTGTGGTGCATAACATTG
GAATTTCTAAATTTGAGTTTCCTTGAAATATTGGAAAAAAAGAAATATCAATGATCGATATGGTGCGACCGTGCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18582.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis