Browse Element(s) Details


OsAffx.18604.2.S1_at

Description tigr:9632.m01314
TID=OsAffx.18604.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1437011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g14304Os.50770.1.S1_at11/114+7988860..7998379Calcium binding EGF domain containing protein, expressed
LOC_Os04g14304OsAffx.12953.1.S1_at1/114+7988860..7998379Calcium binding EGF domain containing protein, expressed
LOC_Os04g14320OsAffx.3789.1.S1_at11/114+8004098..8005149hypothetical protein
LOC_Os04g14330Os.2987.3.S1_x_at3/114+8007020..8008002retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g14340Os.55004.1.S1_at2/114+8013146..8017807retrotransposon protein, putative, unclassified, expressed
LOC_Os04g14350OsAffx.26032.1.S1_at11/114+8018364..8019129hypothetical protein
LOC_Os04g14360OsAffx.3790.1.S1_at11/114+8020498..8022115hypothetical protein
LOC_Os04g14370OsAffx.18604.2.S1_at11/114+8022985..8026614hypothetical protein
LOC_Os04g14380NANA4+8030406..8030789retrotransposon protein, putative, unclassified
LOC_Os04g14390NANA4+8034149..8034382retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g14400NANA4+8042155..8044227retrotransposon protein, putative, unclassified
LOC_Os04g14410Os.54205.1.A1_at10/114+8044491..8052126expressed protein
LOC_Os04g14410OsAffx.22306.1.S1_at1/114+8044491..8052126expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18604.2.S1_at--544--4791Chr04:8023615..8023639 (25 bp)
GCTCCGTGAAGTGCAGCACCGGCGT
LOC_Os04g14370
OsAffx.18604.2.S1_at--833--6991Chr04:8024571..8024595 (25 bp)
GTACGTGATGACCAACTTCGGCAAC
LOC_Os04g14370
OsAffx.18604.2.S1_at--1100--1111Chr04:8024664..8024873 (25 bp)
AGTGCACCACGTGCCGGACAAGTTC
LOC_Os04g14370
OsAffx.18604.2.S1_at--1046--6131Chr04:8026366..8026389 (24 bp)
GAGGGTTTGCTTCGTTCATCGGAAA
LOC_Os04g14370
OsAffx.18604.2.S1_at--291--10631Chr04:8026375..8026399 (25 bp)
TTCGTTCATCGGAAAGGAGCAGGCG
LOC_Os04g14370
OsAffx.18604.2.S1_at--603--1511Chr04:8026412..8026436 (25 bp)
AGCAGCTCACTGAAGAGCGTCATGT
LOC_Os04g14370
OsAffx.18604.2.S1_at--393--5891Chr04:8026426..8026450 (25 bp)
GAGCGTCATGTGCATAACCAGCCAC
LOC_Os04g14370
OsAffx.18604.2.S1_at--394--91Chr04:8026456..8026480 (25 bp)
ATTCCTGTCTGCGTGCTGTCCACTG
LOC_Os04g14370
OsAffx.18604.2.S1_at--405--7312Chr04:8026468..8026492 (25 bp)
GTGCTGTCCACTGCTTCCGTGCGAG
LOC_Os04g14370
OsAffx.18604.2.S1_at--864--9271Chr04:8026483..8026507 (25 bp)
TCCGTGCGAGCACAGACGACAGGTT
LOC_Os04g14370
OsAffx.18604.2.S1_at--1076--7551Chr04:8026524..8026548 (25 bp)
GGGCACTACTCCACCGGCTGGAGGC
LOC_Os04g14370
Target Sequence 
GCTCCGTGAAGTGCAGCACCGGCGTGGCGGCGAGGTCGTGGTCCATGTACTCGAAGACGAGGTAGAAGGGCCGCAGGCGG
GGGACAGAGCATCGGCGGCGGCGGCCGCGACGGCAAGTGGGGGACAGAGCGGCGGCGGCGGCGCGTCGCCAACGCGGTAC
GTGATGACCAACTTCGGCAACTTCCAGGCTCCTGGCCTGGGACAAGAGCTCGTTGGAGTGGATCACCTTCAGCTCGTTCC
CGACGCACCAGTGCACCACGTGCCGGACAAGTTCTCGACGCTCGCCGGGAACATGACGTTCGACGAGTGCGCGGCGAGGG
TTTGCTTCGTTCATCGGAAAGGAGCAGGCGGTGGCCAAGTACAGCAGCTCACTGAAGAGCGTCATGTGCATAACCAGCCA
CCGGCCATTCCTGTCTGCGTGCTGTCCACTGCTTCCGTGCGAGCACAGACGACAGGTTGGGGCATGGCCACACGGGGCAC
TACTCCACCGGCTGGAGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18604.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis