Browse Element(s) Details


OsAffx.18716.1.S1_at

Description tigr:9639.m00647
TID=OsAffx.18716.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0711011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g07050Os.49214.1.S1_at11/1111+3502731..3508683FHA domain containing protein, expressed
LOC_Os11g07060Os.49831.1.S1_at11/1111+3513705..3518114Leucine Rich Repeat family protein, expressed
LOC_Os11g07070OsAffx.18715.1.S1_at11/1111+3519331..3520063hypothetical protein
LOC_Os11g07080OsAffx.8572.1.S1_s_at11/1111+3523164..3526481transposon protein, putative, Mutator sub-class
LOC_Os11g07080OsAffx.8572.1.S1_at9/1111+3523164..3526481transposon protein, putative, Mutator sub-class
LOC_Os11g07090OsAffx.30852.1.S1_at11/1111+3528149..3529750Pectinesterase family protein, expressed
LOC_Os11g07100OsAffx.30853.1.S1_at11/1111+3531469..3532103hypothetical protein
LOC_Os11g07110OsAffx.18716.1.S1_at11/1111+3532785..3536087Leucine Rich Repeat family protein, expressed
LOC_Os11g07120OsAffx.18717.1.S1_at11/1111+3538103..3541241Leucine Rich Repeat family protein, expressed
LOC_Os11g07130OsAffx.30855.1.S1_at11/1111+3548108..3549835Protein kinase domain containing protein
LOC_Os11g07130OsAffx.30855.1.S1_x_at11/1111+3548108..3549835Protein kinase domain containing protein
LOC_Os11g07140OsAffx.30855.1.S1_x_at11/1111+3551666..3553776Protein kinase domain containing protein, expressed
LOC_Os11g07140OsAffx.30855.1.S1_at11/1111+3551666..3553776Protein kinase domain containing protein, expressed
LOC_Os11g07140OsAffx.18717.1.S1_at1/1111+3551666..3553776Protein kinase domain containing protein, expressed
LOC_Os11g07150NANA11+3559500..3561268retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18716.1.S1_at--206--1271Chr11:3535552..3535576 (25 bp)
AGATATTGTTGACCCTGTATTACTA
LOC_Os11g07110
OsAffx.18716.1.S1_at--153--2311Chr11:3535597..3535621 (25 bp)
AAAGGAATCTCCAGTTGCCATGAAG
LOC_Os11g07110
OsAffx.18716.1.S1_at--561--991Chr11:3535736..3535760 (25 bp)
AGGAGGCATATCTCTGAGGCAACTA
LOC_Os11g07110
OsAffx.18716.1.S1_at--604--751Chr11:3535779..3535803 (25 bp)
ATGTACCCTGCCTATAGCTGTGAGA
LOC_Os11g07110
OsAffx.18716.1.S1_at--811--1611Chr11:3535794..3535818 (25 bp)
AGCTGTGAGATACTCTGCTACCTTC
LOC_Os11g07110
OsAffx.18716.1.S1_at--827--4851Chr11:3535810..3535834 (25 bp)
GCTACCTTCTCGCATGGCATGTTTA
LOC_Os11g07110
OsAffx.18716.1.S1_at--672--10231Chr11:3535836..3535860 (25 bp)
TATTGTCACTCTCTCTTATATAATG
LOC_Os11g07110
OsAffx.18716.1.S1_at--953--3032Chr11:3535889..3535913 (25 bp)
AATCCGAGCACTACATTTGGTTTGG
LOC_Os11g07110
OsAffx.18716.1.S1_at--376--8211Chr11:3535912..3535936 (25 bp)
GGAATCTTACACAATTACACTGCAG
LOC_Os11g07110
OsAffx.18716.1.S1_at--716--6611Chr11:3535949..3535973 (25 bp)
GTTGGAAACTCTGCACTGTTATCAT
LOC_Os11g07110
OsAffx.18716.1.S1_at--510--3111Chr11:3536002..3536026 (25 bp)
AATATTCAGCCCTCATGCTTTTTGC
LOC_Os11g07110
Target Sequence 
AGATATTGTTGACCCTGTATTACTACAAGACGAACTGGATTGCTCAAAGGAATCTCCAGTTGCCATGAAGGAAATCTTTT
CTGAGGGTTTACATTCAGTGCTAAACATTGGACTTTGCTGCACCAAGCAGTCCCCGTACGAGCGCATGGACATGCGAGAA
GTGGCTGCAAAGCTACATGGAACAAGGAGGCATATCTCTGAGGCAACTAGGTAATATAATGTAAGATATGTACCCTGCCT
ATAGCTGTGAGATACTCTGCTACCTTCTCGCATGGCATGTTTAATATTGTCACTCTCTCTTATATAATGAAATCACAACT
CTTGTTATTGCTGTAATAATCCGAGCACTACATTTGGTTTGGAATCTTACACAATTACACTGCAGATACATGGTATTGTT
GGAAACTCTGCACTGTTATCATATTCTTTTCTTTTAGAGTAATTGATACCAATATTCAGCCCTCATGCTTTTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18716.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis