Browse Element(s) Details


OsAffx.30852.1.S1_at

Description tigr:9639.m00645
TID=OsAffx.30852.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to pectinesterase 2.1 precursor (ec 3.1.1.11) (pectin methylesterase) (pe). (sweet orange
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0709011/11Pectinesterase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g07050Os.49214.1.S1_at11/1111+3502731..3508683FHA domain containing protein, expressed
LOC_Os11g07060Os.49831.1.S1_at11/1111+3513705..3518114Leucine Rich Repeat family protein, expressed
LOC_Os11g07070OsAffx.18715.1.S1_at11/1111+3519331..3520063hypothetical protein
LOC_Os11g07080OsAffx.8572.1.S1_s_at11/1111+3523164..3526481transposon protein, putative, Mutator sub-class
LOC_Os11g07080OsAffx.8572.1.S1_at9/1111+3523164..3526481transposon protein, putative, Mutator sub-class
LOC_Os11g07090OsAffx.30852.1.S1_at11/1111+3528149..3529750Pectinesterase family protein, expressed
LOC_Os11g07100OsAffx.30853.1.S1_at11/1111+3531469..3532103hypothetical protein
LOC_Os11g07110OsAffx.18716.1.S1_at11/1111+3532785..3536087Leucine Rich Repeat family protein, expressed
LOC_Os11g07120OsAffx.18717.1.S1_at11/1111+3538103..3541241Leucine Rich Repeat family protein, expressed
LOC_Os11g07130OsAffx.30855.1.S1_at11/1111+3548108..3549835Protein kinase domain containing protein
LOC_Os11g07130OsAffx.30855.1.S1_x_at11/1111+3548108..3549835Protein kinase domain containing protein
LOC_Os11g07140OsAffx.30855.1.S1_x_at11/1111+3551666..3553776Protein kinase domain containing protein, expressed
LOC_Os11g07140OsAffx.30855.1.S1_at11/1111+3551666..3553776Protein kinase domain containing protein, expressed
LOC_Os11g07140OsAffx.18717.1.S1_at1/1111+3551666..3553776Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0030599molecular_functionpectinesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30852.1.S1_at--257--3711Chr11:3529150..3529174 (25 bp)
CTACCGGTGCAGTTTCGAGGGACAC
LOC_Os11g07090
OsAffx.30852.1.S1_at--521--1771Chr11:3529152..3529176 (25 bp)
ACCGGTGCAGTTTCGAGGGACACCA
LOC_Os11g07090
OsAffx.30852.1.S1_at--1049--7331Chr11:3529156..3529180 (25 bp)
GTGCAGTTTCGAGGGACACCAGGAC
LOC_Os11g07090
OsAffx.30852.1.S1_at--544--3431Chr11:3529159..3529183 (25 bp)
CAGTTTCGAGGGACACCAGGACACG
LOC_Os11g07090
OsAffx.30852.1.S1_at--864--3931Chr11:3529263..3529287 (25 bp)
CGGCGGTGCTCCAGCGCTGCAGCAT
LOC_Os11g07090
OsAffx.30852.1.S1_at--901--7531Chr11:3529339..3529363 (25 bp)
GGGCCGCGTCGACCGGTACGAGCGC
LOC_Os11g07090
OsAffx.30852.1.S1_at--843--8431Chr11:3529461..3529485 (25 bp)
GGCCATGGAAGGAGTTCTCCCGGGT
LOC_Os11g07090
OsAffx.30852.1.S1_at--742--2111Chr11:3529491..3529515 (25 bp)
ACATGGAGGCGTACATGGACGCCAC
LOC_Os11g07090
OsAffx.30852.1.S1_at--343--7711Chr11:3529633..3529657 (25 bp)
GGGTGGGTACCATGTCATCACCGAT
LOC_Os11g07090
OsAffx.30852.1.S1_at--218--7491Chr11:3529635..3529659 (25 bp)
GTGGGTACCATGTCATCACCGATCC
LOC_Os11g07090
OsAffx.30852.1.S1_at--741--7831Chr11:3529638..3529662 (25 bp)
GGTACCATGTCATCACCGATCCCGG
LOC_Os11g07090
Target Sequence 
CTACCGGTGCAGTTTCGAGGGACACCAGGACACGCTGTACGCGCACACGCTCCGCCAGTTCTACCGCGAGTGCGCCGTCG
CCGGCACCGTCGACTTCGTGTTCGGCAACGCGGCGGCGGTGCTCCAGCGCTGCAGCATCCGCGTCCGCCGCCCGCCGCTC
CCGGGGCAGCCCGCCGTGGTCACCGCGCAGGGCCGCGTCGACCGGTACGAGCGCACCGGGTTCGCCATCCACGGCGGCCG
CGTCACCGCCGCGGCCAGGTTCGGCGCCCCCGGCGCGGCGGCGTCGGCGCCGTTCGAGGCGTACCTGGGGCGGCCATGGA
AGGAGTTCTCCCGGGTGGTGTACATGGAGGCGTACATGGACGCCACGGTGGGCGCGGCGGGGTGGCTGGCGTGGGACGGC
ACGGCGTTCGCGCAGAGCACGGCGTTCTACGGCGAGTACCGGAACTCCGGCCCCGGGTCCGGCACGGAGGGGAGGGTGAG
GTGGGGTGGGTACCATGTCATCACCGATCCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30852.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis