Browse Element(s) Details


OsAffx.18777.1.S1_at

Description tigr:9639.m00955
TID=OsAffx.18777.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1011011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10090Os.52659.1.S1_at11/1111+5437370..5444022transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g10100Os.2444.1.S1_at11/1111+5455747..5460113mitogen-activated kinase kinase kinase alpha, putative, expressed
LOC_Os11g10110OsAffx.18777.1.S1_at11/1111+5460333..5461773expressed protein
LOC_Os11g10110OsAffx.18777.1.S1_s_at10/1111+5460333..5461773expressed protein
LOC_Os11g10120Os.52285.1.S1_at10/1111+5462979..5464738expressed protein
LOC_Os11g10130OsAffx.7057.1.S1_at11/1111+5475121..5478466Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18777.1.S1_at--133--1451Chr11:5460887..5460911 (25 bp)
AGAAGCTCTCCAAGAGCCTAGGCCA
LOC_Os11g10110
OsAffx.18777.1.S1_at--75--2691Chr11:5460885..5460909 (25 bp)
AAGCTCTCCAAGAGCCTAGGCCATT
LOC_Os11g10110
OsAffx.18777.1.S1_at--847--9471Chr11:5460881..5460905 (25 bp)
TCTCCAAGAGCCTAGGCCATTCGTC
LOC_Os11g10110
OsAffx.18777.1.S1_at--786--2771Chr11:5460876..5460900 (25 bp)
AAGAGCCTAGGCCATTCGTCCAAAT
LOC_Os11g10110
OsAffx.18777.1.S1_at--673--1371Chr11:5460875..5460899 (25 bp)
AGAGCCTAGGCCATTCGTCCAAATG
LOC_Os11g10110
OsAffx.18777.1.S1_at--124--5871Chr11:5460874..5460898 (25 bp)
GAGCCTAGGCCATTCGTCCAAATGC
LOC_Os11g10110
OsAffx.18777.1.S1_at--952--1651Chr11:5460873..5460897 (25 bp)
AGCCTAGGCCATTCGTCCAAATGCC
LOC_Os11g10110
OsAffx.18777.1.S1_at--183--10111Chr11:5460869..5460893 (25 bp)
TAGGCCATTCGTCCAAATGCCTCTA
LOC_Os11g10110
OsAffx.18777.1.S1_at--245--8431Chr11:5460867..5460891 (25 bp)
GGCCATTCGTCCAAATGCCTCTACA
LOC_Os11g10110
OsAffx.18777.1.S1_at--802--10611Chr11:5460862..5460886 (25 bp)
TTCGTCCAAATGCCTCTACACCTTG
LOC_Os11g10110
OsAffx.18777.1.S1_at--1038--9511Chr11:5460824..5460848 (25 bp)
TCTACGGCAATGTCCGGGACGTCGA
LOC_Os11g10110
Target Sequence
AGAAGCTCTCCAAGAGCCTAGGCCATTCGTCCAAATGCCTCTACACCTTGCTCCTCTTCTACCTCTACGGCAATGTCCGG
GACGTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18777.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis