Browse Element(s) Details


OsAffx.18845.1.S1_at

Description tigr:9639.m01320
TID=OsAffx.18845.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1431011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g14290NANA11+8012790..8013191hypothetical protein
LOC_Os11g14300Os.18747.1.S1_at11/1111+8013867..8022134La domain-containing protein, putative, expressed
LOC_Os11g14310OsAffx.18845.1.S1_at11/1111+8028280..8028558hypothetical protein
LOC_Os11g14320Os.48823.1.A1_at1/1111+8030712..8032688hypothetical protein
LOC_Os11g14330OsAffx.31892.2.S1_x_at1/1111+8034361..8041580retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g14340Os.10731.1.A1_a_at11/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14340Os.48015.1.A1_at5/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14340OsAffx.3613.1.S1_x_at3/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14340Os.48015.1.A1_x_at3/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14340OsAffx.31869.5.S1_x_at3/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14340OsAffx.3613.1.S1_at2/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14340OsAffx.27522.1.S1_x_at2/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14340OsAffx.20509.1.S1_at2/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14350Os.14491.2.S1_x_at3/1111+8052533..8055913transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14350Os.47463.1.S1_x_at1/1111+8052533..8055913transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14350OsAffx.20057.1.S1_at1/1111+8052533..8055913transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18845.1.S1_at--299--6172Chr11:8028387..8028411 (25 bp)
GAGGAGAAGGTTGCCTAGAAAGGAA
LOC_Os11g14310
OsAffx.18845.1.S1_at--682--8159Chr11:8028419..8028443 (25 bp)
GGAAACAGATGCGGTGCCGTTTTGG
LOC_Os11g14310
OsAffx.18845.1.S1_at--1111--2731Chr11:8028469..8028493 (25 bp)
AAGAGAATAGAACTTGGCTCGTCAT
LOC_Os11g14310
OsAffx.18845.1.S1_at--856--1471Chr11:8028472..8028496 (25 bp)
AGAATAGAACTTGGCTCGTCATACA
LOC_Os11g14310
OsAffx.18845.1.S1_at--901--3092Chr11:8028474..8028498 (25 bp)
AATAGAACTTGGCTCGTCATACAAA
LOC_Os11g14310
OsAffx.18845.1.S1_at--168--10032Chr11:8028476..8028500 (25 bp)
TAGAACTTGGCTCGTCATACAAAAC
LOC_Os11g14310
OsAffx.18845.1.S1_at--953--5472Chr11:8028478..8028502 (25 bp)
GAACTTGGCTCGTCATACAAAACGA
LOC_Os11g14310
OsAffx.18845.1.S1_at--980--2052Chr11:8028480..8028504 (25 bp)
ACTTGGCTCGTCATACAAAACGAAA
LOC_Os11g14310
OsAffx.18845.1.S1_at--7--8495Chr11:8028483..8028507 (25 bp)
TGGCTCGTCATACAAAACGAAACCG
LOC_Os11g14310
OsAffx.18845.1.S1_at--982--7113Chr11:8028489..8028513 (25 bp)
GTCATACAAAACGAAACCGCGGTGG
LOC_Os11g14310
OsAffx.18845.1.S1_at--900--3453Chr11:8028491..8028515 (25 bp)
CATACAAAACGAAACCGCGGTGGCA
LOC_Os11g14310
Target Sequence 
GAGGAGAAGGTTGCCTAGAAAGGAAAGGTGGGGGAAACAGATGCGGTGCCGTTTTGGGAAAGGAAGAGGAAACGGAACCA
GAAAGAGAATAGAACTTGGCTCGTCATACAAAACGAAACCGCGGTGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18845.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis