Browse Element(s) Details


OsAffx.18858.1.S1_at

Description tigr:9639.m01393
TID=OsAffx.18858.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1505011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g15010Os.50187.1.S1_at11/1111+8441959..8443906transposon protein, putative, Mutator sub-class, expressed
LOC_Os11g15020OsAffx.7114.1.S1_at11/1111+8448152..8448676expressed protein
LOC_Os11g15030OsAffx.18857.1.S1_at11/1111+8451461..8454568SAM dependent carboxyl methyltransferase family protein
LOC_Os11g15040Os.17356.1.A1_a_at11/1111+8461158..8463673Benzoate carboxyl methyltransferase, putative, expressed
LOC_Os11g15050OsAffx.18858.1.S1_at11/1111+8467277..8468519hypothetical protein
LOC_Os11g15060Os.17356.1.A1_a_at1/1111+8472066..8474370SAM dependent carboxyl methyltransferase family protein
LOC_Os11g15070NANA11+8475955..8478772hypothetical protein
LOC_Os11g15080NANA11+8479885..8484179retrotransposon protein, putative, unclassified
LOC_Os11g15090NANA11+8486614..8492724retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g15100NANA11+8493040..8495948retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18858.1.S1_at--21--1371Chr11:8467979..8468003 (25 bp)
AGAGAATCAAGTGCGGCGCTGCTGC
LOC_Os11g15050
OsAffx.18858.1.S1_at--132--311Chr11:8468152..8468176 (25 bp)
ATACCAGAGGAAGAGGCCGTGCGTC
LOC_Os11g15050
OsAffx.18858.1.S1_at--452--8091Chr11:8468238..8468262 (25 bp)
GGACCACCGAGCGTCGAGCTTGATG
LOC_Os11g15050
OsAffx.18858.1.S1_at--745--5911Chr11:8468253..8468277 (25 bp)
GAGCTTGATGATTGCGTCCTCGGAC
LOC_Os11g15050
OsAffx.18858.1.S1_at--934--1951Chr11:8468276..8468300 (25 bp)
ACTGGATCTCCTACAGTGCCTCGAG
LOC_Os11g15050
OsAffx.18858.1.S1_at--834--9491Chr11:8468318..8468342 (25 bp)
TCTCCTGCCAGACTTTAGTGACGAC
LOC_Os11g15050
OsAffx.18858.1.S1_at--416--5792Chr11:8468337..8468361 (25 bp)
GACGACGTTCACTATCAGGATGAGC
LOC_Os11g15050
OsAffx.18858.1.S1_at--647--671Chr11:8468365..8468389 (25 bp)
ATGACGAAGGGTTCCACAACGGCGG
LOC_Os11g15050
OsAffx.18858.1.S1_at--398--9251Chr11:8468407..8468431 (25 bp)
TCCTCTGCGCCATCATAGAGTGCGA
LOC_Os11g15050
OsAffx.18858.1.S1_at--194--5951Chr11:8468430..8468454 (25 bp)
GAGCACGAACGACACAACGGCCGAG
LOC_Os11g15050
OsAffx.18858.1.S1_at--737--2571Chr11:8468445..8468469 (25 bp)
AACGGCCGAGGCAAGCACCAGCTTC
LOC_Os11g15050
Target Sequence 
AGAGAATCAAGTGCGGCGCTGCTGCTGTTGTTGCCTGCCGCTGGCGTCAAGGGAGTGCGTGCTGCTGCTGCCGCTGCTGG
GACAGGAGCATGAGGACGCGGCCCTTGCTGCCGCAGCACAGCCCTCCCAAACTCCACCGCCGCCGCTGACGACCACCGCC
AGCCGCGGACGGGATACCAGAGGAAGAGGCCGTGCGTCCGCACCGTGTGCTACCTTTGCCACGGTCGCCGCCGATGAGAT
CGCGCGCCGGAAGCCCATGGGACCACCGAGCGTCGAGCTTGATGATTGCGTCCTCGGACTGGATCTCCTACAGTGCCTCG
AGCGCCTTCTCGGCATTGCTCTCCTGCCAGACTTTAGTGACGACGTTCACTATCAGGATGAGCTAGATGACGAAGGGTTC
CACAACGGCGGTTGCCCTGACCTCGTCGTCCTCTGCGCCATCATAGAGTGCGAGCACGAACGACACAACGGCCGAGGCAA
GCACCAGCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18858.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis