Browse Element(s) Details


OsAffx.18868.1.S1_at

Description tigr:9638.m01673
TID=OsAffx.18868.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2029011/11hypothetical protein
LOC_Os11g149403/11hypothetical protein
LOC_Os11g147801/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g20260Os.46814.1.S1_at11/1110+9849044..9856261Cellulose synthase family protein, expressed
LOC_Os10g20270Os.44418.2.S1_at7/1110+9858684..9863139hypothetical protein
LOC_Os10g20270Os.44418.1.S1_at1/1110+9858684..9863139hypothetical protein
LOC_Os10g20280OsAffx.20490.1.S1_at11/1110+9866121..9869681transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20290OsAffx.18868.1.S1_at11/1110+9872308..9872983hypothetical protein
LOC_Os10g20300OsAffx.26996.1.S1_x_at1/1110+9877039..9879281hypothetical protein
LOC_Os10g20310Os.24385.2.S1_at11/1110+9884668..9886941expressed protein
LOC_Os10g20310OsAffx.12964.1.S1_at1/1110+9884668..9886941expressed protein
LOC_Os10g20320NANA10+9894109..9894792transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20330Os.46314.3.S1_at1/1110+9895339..9896384transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18868.1.S1_at--872--1751Chr10:9872896..9872920 (25 bp)
ACCTCCGGTTGCAACTTTCTCAAGA
LOC_Os10g20290
OsAffx.18868.1.S1_at--333--3811Chr10:9872894..9872918 (25 bp)
CTCCGGTTGCAACTTTCTCAAGATC
LOC_Os10g20290
OsAffx.18868.1.S1_at--598--10311Chr10:9872881..9872905 (25 bp)
TTTCTCAAGATCAAAATACGCAACG
LOC_Os10g20290
OsAffx.18868.1.S1_at--426--6451Chr10:9872873..9872897 (25 bp)
GATCAAAATACGCAACGCGATCAAG
LOC_Os10g20290
OsAffx.18868.1.S1_at--74--2272Chr11:8405104..8405128 (25 bp)
AAATCTCACCAAGGCAGCAAATACG
LOC_Os11g14940
OsAffx.18868.1.S1_at--913--2932Chr11:8405114..8405138 (25 bp)
AAGGCAGCAAATACGACATCGAGTC
LOC_Os11g14940
OsAffx.18868.1.S1_at--965--9191Chr10:9872768..9872829 (25 bp)
TCCAGGCCGCAGCAAATAAATATTC
LOC_Os10g20290
OsAffx.18868.1.S1_at--994--5114Chr11:8405120..8405215 (25 bp)
GCAAATAAATATTCGGGCAACGGCT
LOC_Os11g14940
OsAffx.18868.1.S1_at--1123--5731Chr10:9872532..9872556 (25 bp)
GACGTCCTGGCGAGCCAGTGGTCCA
LOC_Os10g20290
OsAffx.18868.1.S1_at--1037--5851Chr10:9872521..9872545 (25 bp)
GAGCCAGTGGTCCAGCACCGATGAT
LOC_Os10g20290
OsAffx.18868.1.S1_at--7--4431Chr10:9872519..9872543 (25 bp)
GCCAGTGGTCCAGCACCGATGATGA
LOC_Os10g20290
Target Sequence 
ACCTCCGGTTGCAACTTTCTCAAGATCAAAATACGCAACGCGATCAAGAAATCTCACCAAGGCAGCAAATACGACATCGA
GTCGTCCAAGTTCCAGGCCGCAGCAAATAAATATTCGGGCAACGGCTACTCCACCGTGTGCCTCAAGCTCCACGCCGCCG
ACCCCGGCACCGCCACCGCCGCCGGCGGCGGCATCCGAACCAACGTCCGGTTCCGCATGGTCAGTCTGCAGCCGTGCGTG
CCTCCGACGAACGAGGTGAGGAGCTACGCGACGTCGTTCCACGGCACCGGGAAGGCGGAGTACTGCTGCTTCACGTTCAT
CCGCCACGACGTCCTGGCGAGCCAGTGGTCCAGCACCGATGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18868.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis