Browse Element(s) Details


Os.24385.2.S1_at

Description gb:AK071027.1
DB_XREF= gi:32981050
TID=Os.24385.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.24385 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1088C09.21 (B1088C09.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023075N21, full insert sequence.
FL= gb:AK071027.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2031011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g20270Os.44418.2.S1_at7/1110+9858684..9863139hypothetical protein
LOC_Os10g20270Os.44418.1.S1_at1/1110+9858684..9863139hypothetical protein
LOC_Os10g20280OsAffx.20490.1.S1_at11/1110+9866121..9869681transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20290OsAffx.18868.1.S1_at11/1110+9872308..9872983hypothetical protein
LOC_Os10g20300OsAffx.26996.1.S1_x_at1/1110+9877039..9879281hypothetical protein
LOC_Os10g20310Os.24385.2.S1_at11/1110+9884668..9886941expressed protein
LOC_Os10g20310OsAffx.12964.1.S1_at1/1110+9884668..9886941expressed protein
LOC_Os10g20320NANA10+9894109..9894792transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20330Os.46314.3.S1_at1/1110+9895339..9896384transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20340OsAffx.18308.1.S1_at11/1110+9899331..9899650hypothetical protein
LOC_Os10g20350Os.46698.2.S1_x_at11/1110+9900424..9903061MATE efflux family protein, expressed
LOC_Os10g20350Os.46698.1.S1_at10/1110+9900424..9903061MATE efflux family protein, expressed
LOC_Os10g20350Os.46698.3.S1_x_at3/1110+9900424..9903061MATE efflux family protein, expressed
LOC_Os10g20360OsAffx.30460.1.S1_at11/1110+9906462..9908158hypothetical protein
LOC_Os10g20370OsAffx.6707.1.S1_at11/1110+9909974..9910438hypothetical protein
LOC_Os10g20380Os.46698.2.S1_x_at4/1110+9911239..9912608TRANSPARENT TESTA 12 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005489molecular_functionelectron transporter activity
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24385.2.S1_at--1070--7371Chr10:9885242..9885266 (25 bp)
GTGACCTACACTGCTTTAGTTCTAG
LOC_Os10g20310
Os.24385.2.S1_at--640--10431Chr10:9885227..9885251 (25 bp)
TTAGTTCTAGGCTCCTGGCAAAGGT
LOC_Os10g20310
Os.24385.2.S1_at--1046--1751Chr10:9885081..9885105 (25 bp)
ACCTCCTGATGCTGCAGTCATATGG
LOC_Os10g20310
Os.24385.2.S1_at--915--6651Chr10:9885047..9885071 (25 bp)
GTTGAGCTAAGCAATTGGCAATTTC
LOC_Os10g20310
Os.24385.2.S1_at--1090--7671Chr10:9884980..9885004 (25 bp)
GGGTTACATCATGGCTGATGGCGAT
LOC_Os10g20310
Os.24385.2.S1_at--599--6231Chr10:9884964..9884988 (25 bp)
GATGGCGATAGTGGCATCCATTTTA
LOC_Os10g20310
Os.24385.2.S1_at--814--6111Chr10:9884939..9884963 (25 bp)
GAGTGATGAAGCTATCCCAGGATGA
LOC_Os10g20310
Os.24385.2.S1_at--1046--6591Chr10:9884902..9884926 (25 bp)
GATTGATGGTTATTAAGTCCTTTTC
LOC_Os10g20310
Os.24385.2.S1_at--430--10371Chr10:9884882..9884906 (25 bp)
TTTTCTTTTTCCAGACTGCCGGCAA
LOC_Os10g20310
Os.24385.2.S1_at--294--10311Chr10:9884839..9884863 (25 bp)
TTTTTCTGGTTGCACGGCCTTTTGG
LOC_Os10g20310
Os.24385.2.S1_at--57--10851Chr10:9884818..9884842 (25 bp)
TTGGTTGCCCATGCTTATACTGGTT
LOC_Os10g20310
Target Sequence 
GTGACCTACACTGCTTTAGTTCTAGGCTCCTGGCAAAGGTAAGCNCTAGAAAGNCATNCCAGAACTAAGTAACAATGTAT
ACTTCTTTCTTAATATCAGAACATAGTATTGATGTATGGGATTTTGATGTTGAATTTGTTTTGTGAATCATCAGATCCTT
CACCTCCTGATGCTGCAGTCATATGGACTTCATTAGTTGAGCTAAGCAATTGGCAATTTCATGGAAAACTAGGAAGCNCN
CTATAGCTAATGGTAAAAGCTGGGGTTACATCATGGCTGATGGCGATAGTGGCATCCATTTTAGAGTGATGAAGCTATCC
CAGGATGAAAAACAGACAATGATTGATGGTTATTAAGTCCTTTTCTTTTTCCAGACTGCCGGCAATGCTGTTNGTNTAAG
CTTTTTTTCTGGTTGCACGGCCTTTTGGTTGCCCATGCTTATACTGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24385.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis