Browse Element(s) Details


Os.46698.2.S1_x_at

Description gb:NM_195885.1
DB_XREF= gi:37533129
TID=Os.46698.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46698 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative integral membrane protein (OSJNBb0052C09.8), mRNA.
PROD=putative integral membrane protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2035011/11MATE efflux family protein, expressed
LOC_Os10g203804/11TRANSPARENT TESTA 12 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g20300OsAffx.26996.1.S1_x_at1/1110+9877039..9879281hypothetical protein
LOC_Os10g20310Os.24385.2.S1_at11/1110+9884668..9886941expressed protein
LOC_Os10g20310OsAffx.12964.1.S1_at1/1110+9884668..9886941expressed protein
LOC_Os10g20320NANA10+9894109..9894792transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20330Os.46314.3.S1_at1/1110+9895339..9896384transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20340OsAffx.18308.1.S1_at11/1110+9899331..9899650hypothetical protein
LOC_Os10g20350Os.46698.2.S1_x_at11/1110+9900424..9903061MATE efflux family protein, expressed
LOC_Os10g20350Os.46698.1.S1_at10/1110+9900424..9903061MATE efflux family protein, expressed
LOC_Os10g20350Os.46698.3.S1_x_at3/1110+9900424..9903061MATE efflux family protein, expressed
LOC_Os10g20360OsAffx.30460.1.S1_at11/1110+9906462..9908158hypothetical protein
LOC_Os10g20370OsAffx.6707.1.S1_at11/1110+9909974..9910438hypothetical protein
LOC_Os10g20380Os.46698.2.S1_x_at4/1110+9911239..9912608TRANSPARENT TESTA 12 protein, putative, expressed
LOC_Os10g20390Os.46698.3.S1_x_at10/1110+9917907..9921184MatE family protein, expressed
LOC_Os10g20390Os.46698.3.S1_at8/1110+9917907..9921184MatE family protein, expressed
LOC_Os10g20400OsAffx.8254.1.S1_at11/1110+9927408..9930812retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46698.2.S1_x_at--734--291Chr10:9901298..9901322 (25 bp)
ATAGCCATGACCGTGCTTGTATGCC
LOC_Os10g20350
Os.46698.2.S1_x_at--137--10812Chr10:9912550..9912574 (25 bp)
TTGTATGCCTCGTGCTAGTGATAGC
LOC_Os10g20380
Os.46698.2.S1_x_at--499--6491Chr10:9901263..9901287 (25 bp)
GATAGCCATGATTTTTCTGCGCAAT
LOC_Os10g20350
Os.46698.2.S1_x_at--844--231Chr10:9901197..9901221 (25 bp)
ATATATTGCAAGTATGCTCCCCGTC
LOC_Os10g20350
Os.46698.2.S1_x_at--350--7811Chr10:9901167..9901191 (25 bp)
GGTCTCCTTCTTCATAGATGGCATC
LOC_Os10g20350
Os.46698.2.S1_x_at--172--32Chr10:9900936..9900960 (25 bp)
ATTGGCGCTCATGTGAATCTTGCTG
LOC_Os10g20350
Os.46698.2.S1_x_at--215--3051Chr10:9900921..9900945 (25 bp)
AATCTTGCTGCGTTTTACTTGGTTG
LOC_Os10g20350
Os.46698.2.S1_x_at--284--10412Chr10:9912181..9912205 (25 bp)
TTACTTGGTTGGTATTCCGACGGCT
LOC_Os10g20380
Os.46698.2.S1_x_at--263--2332Chr10:9911935..9911959 (25 bp)
AAAGTAGGGATGCTCCTCTTCATCA
LOC_Os10g20380
Os.46698.2.S1_x_at--85--3731Chr10:9900552..9900635 (25 bp)
CTACAAACACTTCGGCTATCATGGC
LOC_Os10g20350
Os.46698.2.S1_x_at--821--2871Chr10:9900521..9900545 (25 bp)
AAGGGTCTTCAGTTCAAGTCTTCCA
LOC_Os10g20350
Target Sequence 
ATAGCCATGACCGTGCTTGTATGCCTCGTGCTAGTGATAGCCATGATTTTTCTGCGCAATGTCTGGGGAAATGCCTATAG
CAGCGAGGAGGAAGTGGTGGCATATATTGCAAGTATGCTCCCCGTCCTTGCGGTCTCCTTCTTCATAGATGGCATCAATG
GTGCTCTTTCAGGAGTTTTGACAGGATGTGGTAAGCAGAACATTGGCGCTCATGTGAATCTTGCTGCGTTTTACTTGGTT
GGTATTCCGACGGCTGTGCTGCTTGCATTTGTCCTCCATCTCAATGGAGAGGGTCTTTGGCTTGGCCTTGTGTGTGGCAG
TATCAGTAAAGTAGGGATGCTCCTCTTCATCACACTGCGTACAGATTGGGGAAAAGAAGTGCGAAAACCTTCACCCTACA
AACACTTCGGCTATCATGGCAAAAGAAAGGGTCTTCAGTTCAAGTCTTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46698.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis