Browse Element(s) Details


Os.46698.3.S1_at

Description gb:NM_195888.1
DB_XREF= gi:37533135
TID=Os.46698.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46698 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative integral membrane protein (OSJNBb0052C09.11), mRNA.
PROD=putative integral membrane protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g203908/11MatE family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g20320NANA10+9894109..9894792transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20330Os.46314.3.S1_at1/1110+9895339..9896384transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20340OsAffx.18308.1.S1_at11/1110+9899331..9899650hypothetical protein
LOC_Os10g20350Os.46698.2.S1_x_at11/1110+9900424..9903061MATE efflux family protein, expressed
LOC_Os10g20350Os.46698.1.S1_at10/1110+9900424..9903061MATE efflux family protein, expressed
LOC_Os10g20350Os.46698.3.S1_x_at3/1110+9900424..9903061MATE efflux family protein, expressed
LOC_Os10g20360OsAffx.30460.1.S1_at11/1110+9906462..9908158hypothetical protein
LOC_Os10g20370OsAffx.6707.1.S1_at11/1110+9909974..9910438hypothetical protein
LOC_Os10g20380Os.46698.2.S1_x_at4/1110+9911239..9912608TRANSPARENT TESTA 12 protein, putative, expressed
LOC_Os10g20390Os.46698.3.S1_x_at10/1110+9917907..9921184MatE family protein, expressed
LOC_Os10g20390Os.46698.3.S1_at8/1110+9917907..9921184MatE family protein, expressed
LOC_Os10g20400OsAffx.8254.1.S1_at11/1110+9927408..9930812retrotransposon protein, putative, unclassified
LOC_Os10g20410Os.45976.1.S1_x_at5/1110+9931979..9935144transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20420NANA10+9939731..9940222hypothetical protein
LOC_Os10g20430Os.46306.1.S1_x_at6/1110+9941426..9946497transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46698.3.S1_at--458--7791Chr10:9920481..9920505 (25 bp)
GGTGCCGTGACGTACTGGACCAACT
LOC_Os10g20390
Os.46698.3.S1_at--1134--9151Chr10:9920479..9920503 (25 bp)
TGCCGTGACGTACTGGACCAACTTC
LOC_Os10g20390
Os.46698.3.S1_at--650--8491NONE
TGGCTCATCTTTAAGGGTCCGAACA
NONE
Os.46698.3.S1_at--1017--4791NONE
GCTCATCTTTAAGGGTCCGAACACC
NONE
Os.46698.3.S1_at--570--10311Chr10:9917988..9918008 (21 bp)
TTTAAGGGTCCGAACACCCCATATG
LOC_Os10g20390
Os.46698.3.S1_at--1154--2592Chr11:24889334..24889711 (25 bp)
TAAGGGTCCGAACACCCCATATGAC
NONE
Os.46698.3.S1_at--847--1052Chr11:24889336..24889713 (25 bp)
AGGGTCCGAACACCCCATATGACAC
NONE
Os.46698.3.S1_at--66--6272Chr10:9917945..9917969 (25 bp)
GATGTGACACACCAATACTTTATAT
LOC_Os10g20390
Os.46698.3.S1_at--89--5631Chr10:9917940..9917964 (25 bp)
GACACACCAATACTTTATATCCCCT
LOC_Os10g20390
Os.46698.3.S1_at--577--2191Chr10:9917939..9917963 (25 bp)
ACACACCAATACTTTATATCCCCTG
LOC_Os10g20390
Os.46698.3.S1_at--1096--2131Chr10:9917937..9917961 (25 bp)
ACACCAATACTTTATATCCCCTGGA
LOC_Os10g20390
Target Sequence 
GGTGCCGTGACGTACTGGACCAACTTCGCCGTCCTCGCCTTCTACGCGCGGCTGTCCGGCGCCTGCAAGACGACGTGGAC
CGGGTTCTCCATGAACGCCTTCAGGGAGCTCCGCCGGTTCACCGAGCTCGCCGTGCCGTCCGCCATGATGGTCTGCTTGG
AGTGGTCGTCGTTTGAGATACTTGTGCTGCTCTCTGGCATTCTGCCGAATCCTCAGCTTGAAACTGCTGTTCTGTCAATC
AGCTTGAGCACTGCTTCTCTCCTGATCATGGTGCCACGTGGCATTGGCTCATCTTTAAGGGTCCGAACACCCCATATGAC
ACCCTATATAATATCTGATGTGACACACCAATACTTTATATCCCCTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46698.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis