Browse Element(s) Details


Os.46698.1.S1_at

Description gb:AK105578.1
DB_XREF= gi:32990787
TID=Os.46698.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46698 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative integral membrane protein (OSJNBb0052C09.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-128-E01, full insert sequence.
FL= gb:AK105578.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2035010/11MATE efflux family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g20300OsAffx.26996.1.S1_x_at1/1110+9877039..9879281hypothetical protein
LOC_Os10g20310Os.24385.2.S1_at11/1110+9884668..9886941expressed protein
LOC_Os10g20310OsAffx.12964.1.S1_at1/1110+9884668..9886941expressed protein
LOC_Os10g20320NANA10+9894109..9894792transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20330Os.46314.3.S1_at1/1110+9895339..9896384transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20340OsAffx.18308.1.S1_at11/1110+9899331..9899650hypothetical protein
LOC_Os10g20350Os.46698.2.S1_x_at11/1110+9900424..9903061MATE efflux family protein, expressed
LOC_Os10g20350Os.46698.1.S1_at10/1110+9900424..9903061MATE efflux family protein, expressed
LOC_Os10g20350Os.46698.3.S1_x_at3/1110+9900424..9903061MATE efflux family protein, expressed
LOC_Os10g20360OsAffx.30460.1.S1_at11/1110+9906462..9908158hypothetical protein
LOC_Os10g20370OsAffx.6707.1.S1_at11/1110+9909974..9910438hypothetical protein
LOC_Os10g20380Os.46698.2.S1_x_at4/1110+9911239..9912608TRANSPARENT TESTA 12 protein, putative, expressed
LOC_Os10g20390Os.46698.3.S1_x_at10/1110+9917907..9921184MatE family protein, expressed
LOC_Os10g20390Os.46698.3.S1_at8/1110+9917907..9921184MatE family protein, expressed
LOC_Os10g20400OsAffx.8254.1.S1_at11/1110+9927408..9930812retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46698.1.S1_at--888--3711Chr10:9900611..9900635 (25 bp)
CTACAAACACTTCGGTTAGTATTAT
LOC_Os10g20350
Os.46698.1.S1_at--92--3651Chr10:9900602..9900626 (25 bp)
CTTCGGTTAGTATTATGTATTCAGT
LOC_Os10g20350
Os.46698.1.S1_at--1064--8751Chr10:9900587..9900611 (25 bp)
TGTATTCAGTGGAACTTCAGTTAAC
LOC_Os10g20350
Os.46698.1.S1_at--213--10451Chr10:9900572..9900596 (25 bp)
TTCAGTTAACTGTGTTTCGTTGTCC
LOC_Os10g20350
Os.46698.1.S1_at--351--6771Chr10:9900568..9900592 (25 bp)
GTTAACTGTGTTTCGTTGTCCAATT
LOC_Os10g20350
Os.46698.1.S1_at--616--1951Chr10:9900564..9900588 (25 bp)
ACTGTGTTTCGTTGTCCAATTTTCA
LOC_Os10g20350
Os.46698.1.S1_at--1116--6831Chr10:9900559..9900583 (25 bp)
GTTTCGTTGTCCAATTTTCAGGCTA
LOC_Os10g20350
Os.46698.1.S1_at--712--4031Chr10:9900555..9900579 (25 bp)
CGTTGTCCAATTTTCAGGCTATCAT
LOC_Os10g20350
Os.46698.1.S1_at--447--7891Chr10:9900435..9900459 (25 bp)
GGTTCTTTAATAAGGGTCAGCGTGT
LOC_Os10g20350
Os.46698.1.S1_at--705--9191Chr10:9900428..9900452 (25 bp)
TAATAAGGGTCAGCGTGTTGCAAGC
LOC_Os10g20350
Os.46698.1.S1_at--494--2871Chr10:9900424..9900448 (25 bp)
AAGGGTCAGCGTGTTGCAAGCGGTT
NONE
Target Sequence 
CTACAAACACTTCGGTTAGTATTATGTATTCAGTGGAACTTCAGTTAACTGTGTTTCGTTGTCCAATTTTCAGGCTATCA
TGGCAAAAGAAAGGGTCTTCAGTTCAAGTCTTCCAACTCGATGAAGAATTCGAGAAATGTTGGTGTAGTATTCTCCAATG
AAGATGTATTCAACGTGGTTCTTTAATAAGGGTCAGCGTGTTGCAAGCGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46698.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis