Browse Element(s) Details


OsAffx.30460.1.S1_at

Description tigr:9638.m01680
TID=OsAffx.30460.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2036011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g20310Os.24385.2.S1_at11/1110+9884668..9886941expressed protein
LOC_Os10g20310OsAffx.12964.1.S1_at1/1110+9884668..9886941expressed protein
LOC_Os10g20320NANA10+9894109..9894792transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20330Os.46314.3.S1_at1/1110+9895339..9896384transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20340OsAffx.18308.1.S1_at11/1110+9899331..9899650hypothetical protein
LOC_Os10g20350Os.46698.2.S1_x_at11/1110+9900424..9903061MATE efflux family protein, expressed
LOC_Os10g20350Os.46698.1.S1_at10/1110+9900424..9903061MATE efflux family protein, expressed
LOC_Os10g20350Os.46698.3.S1_x_at3/1110+9900424..9903061MATE efflux family protein, expressed
LOC_Os10g20360OsAffx.30460.1.S1_at11/1110+9906462..9908158hypothetical protein
LOC_Os10g20370OsAffx.6707.1.S1_at11/1110+9909974..9910438hypothetical protein
LOC_Os10g20380Os.46698.2.S1_x_at4/1110+9911239..9912608TRANSPARENT TESTA 12 protein, putative, expressed
LOC_Os10g20390Os.46698.3.S1_x_at10/1110+9917907..9921184MatE family protein, expressed
LOC_Os10g20390Os.46698.3.S1_at8/1110+9917907..9921184MatE family protein, expressed
LOC_Os10g20400OsAffx.8254.1.S1_at11/1110+9927408..9930812retrotransposon protein, putative, unclassified
LOC_Os10g20410Os.45976.1.S1_x_at5/1110+9931979..9935144transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30460.1.S1_at--1016--2931Chr10:9907504..9907528 (25 bp)
AAGGCTATGAACTTCCATCGGACTT
LOC_Os10g20360
OsAffx.30460.1.S1_at--162--10191Chr10:9907570..9907594 (25 bp)
TATTTATAACGGCTATCACCCCTTG
LOC_Os10g20360
OsAffx.30460.1.S1_at--977--4931Chr10:9907594..9907618 (25 bp)
GCATTCTTCAGACCGGCATTTCTAT
LOC_Os10g20360
OsAffx.30460.1.S1_at--1133--2151Chr10:9907622..9907646 (25 bp)
ACACCACTCTCATATCTCGTATGAA
LOC_Os10g20360
OsAffx.30460.1.S1_at--1098--9411Chr10:9907684..9907708 (25 bp)
TCGGCCAAGTCCCTATCAAAGTTTA
LOC_Os10g20360
OsAffx.30460.1.S1_at--591--5111Chr10:9907749..9907773 (25 bp)
GCACTTAAGTGCGATTGTCTCCCAA
LOC_Os10g20360
OsAffx.30460.1.S1_at--300--2271Chr10:9907787..9907811 (25 bp)
AAATCTTGGTCCCTTCATTGACTGG
LOC_Os10g20360
OsAffx.30460.1.S1_at--820--10731Chr10:9907804..9907828 (25 bp)
TTGACTGGGACAGCCGTACTATCGG
LOC_Os10g20360
OsAffx.30460.1.S1_at--1085--5171Chr10:9907857..9907881 (25 bp)
GAATGGAAGCGTCACCTTTTCAACC
LOC_Os10g20360
OsAffx.30460.1.S1_at--1134--10651Chr10:9907895..9907919 (25 bp)
TTCCTCGCTTTACTTGATCCTAAAT
LOC_Os10g20360
OsAffx.30460.1.S1_at--588--9211Chr10:9907912..9907936 (25 bp)
TCCTAAATTCGTTCCTGATGATGCT
LOC_Os10g20360
Target Sequence 
AAGGCTATGAACTTCCATCGGACTTCAATCTGAACAACATTAACTCTGATGAAGCAAGCCGAGAGATATTTATAACGGCT
ATCACCCCTTGCATTCTTCAGACCGGCATTTCTATGGGACACCACTCTCATATCTCGTATGAATTCTATCACCCATTAGT
GGTGGCCCATCAACTTGGTTTCGGCCAAGTCCCTATCAAAGTTTACTTCATCAAAAAGATACAAACTCGGGGAACGATCA
CAAGTGCACTTAAGTGCGATTGTCTCCCAAACCTCAATGGTCCAAATCTTGGTCCCTTCATTGACTGGGACAGCCGTACT
ATCGGCAGTAGACCATGGATCAAATGGTGGGGTGAATGGAAGCGTCACCTTTTCAACCTCCAGTCTACAACTTCCTCGCT
TTACTTGATCCTAAATTCGTTCCTGATGATGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30460.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis