Browse Element(s) Details


OsAffx.18910.1.S1_at

Description tigr:9639.m01658
TID=OsAffx.18910.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1801011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g17980OsAffx.31033.1.S1_at10/1111+10081039..10081907hypothetical protein
LOC_Os11g17990Os.46012.3.S1_x_at5/1111+10085974..10091655retrotransposon protein, putative, unclassified
LOC_Os11g17990Os.46012.2.S1_x_at3/1111+10085974..10091655retrotransposon protein, putative, unclassified
LOC_Os11g17990Os.46012.3.S1_at2/1111+10085974..10091655retrotransposon protein, putative, unclassified
LOC_Os11g17990Os.54691.1.S1_x_at1/1111+10085974..10091655retrotransposon protein, putative, unclassified
LOC_Os11g18000OsAffx.31034.1.S1_at10/1111+10094394..10097516hypothetical protein
LOC_Os11g18010OsAffx.18910.1.S1_at11/1111+10106236..10107068hypothetical protein
LOC_Os11g18020NANA11+10109007..10109294hypothetical protein
LOC_Os11g18044Os.11388.1.S1_at11/1111+10111373..10121816POT family protein, expressed
LOC_Os11g18044OsAffx.7137.1.S1_at7/1111+10111373..10121816POT family protein, expressed
LOC_Os11g18044OsAffx.18909.1.S1_x_at1/1111+10111373..10121816POT family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18910.1.S1_at--71--7991Chr11:10107010..10107034 (25 bp)
GGATGTCGTGGTTGATGCAGCCAAT
LOC_Os11g18010
OsAffx.18910.1.S1_at--263--6331Chr11:10106997..10107021 (25 bp)
GATGCAGCCAATAGCTACTGTCGTG
LOC_Os11g18010
OsAffx.18910.1.S1_at--221--3731Chr11:10106983..10107007 (25 bp)
CTACTGTCGTGGACGAGATAGCTGA
LOC_Os11g18010
OsAffx.18910.1.S1_at--1013--9971Chr11:10106507..10106989 (25 bp)
TAGCTGAGCCACAAGGTAAAACTTT
LOC_Os11g18010
OsAffx.18910.1.S1_at--816--2392Chr11:10106489..10106513 (25 bp)
AAACTTTATCAATTGCTTCGTGCAC
LOC_Os11g18010
OsAffx.18910.1.S1_at--306--371Chr11:10106482..10106506 (25 bp)
ATCAATTGCTTCGTGCACCGGTTTA
LOC_Os11g18010
OsAffx.18910.1.S1_at--1089--9351Chr11:10106472..10106496 (25 bp)
TCGTGCACCGGTTTACCTTTGGTCT
LOC_Os11g18010
OsAffx.18910.1.S1_at--989--7051Chr11:10106451..10106475 (25 bp)
GTCTTCCAAGAAGACTTCGACCTAC
LOC_Os11g18010
OsAffx.18910.1.S1_at--850--5671Chr11:10106439..10106463 (25 bp)
GACTTCGACCTACAACTTTATGATG
LOC_Os11g18010
OsAffx.18910.1.S1_at--233--10131Chr11:10106421..10106445 (25 bp)
TATGATGTACCTGAGCGTGCAGGAT
LOC_Os11g18010
OsAffx.18910.1.S1_at--114--3851Chr11:10106411..10106435 (25 bp)
CTGAGCGTGCAGGATTACAAAGGAT
LOC_Os11g18010
Target Sequence 
GGATGTCGTGGTTGATGCAGCCAATAGCTACTGTCGTGGACGAGATAGCTGAGCCACAAGGTAAAACTTTATCAATTGCT
TCGTGCACCGGTTTACCTTTGGTCTTCCAAGAAGACTTCGACCTACAACTTTATGATGTACCTGAGCGTGCAGGATTACA
AAGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18910.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis