Browse Element(s) Details


OsAffx.7137.1.S1_at

Description tigr:9639.m01660
TID=OsAffx.7137.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g180447/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g17990Os.46012.3.S1_x_at5/1111+10085974..10091655retrotransposon protein, putative, unclassified
LOC_Os11g17990Os.46012.2.S1_x_at3/1111+10085974..10091655retrotransposon protein, putative, unclassified
LOC_Os11g17990Os.46012.3.S1_at2/1111+10085974..10091655retrotransposon protein, putative, unclassified
LOC_Os11g17990Os.54691.1.S1_x_at1/1111+10085974..10091655retrotransposon protein, putative, unclassified
LOC_Os11g18000OsAffx.31034.1.S1_at10/1111+10094394..10097516hypothetical protein
LOC_Os11g18010OsAffx.18910.1.S1_at11/1111+10106236..10107068hypothetical protein
LOC_Os11g18020NANA11+10109007..10109294hypothetical protein
LOC_Os11g18044Os.11388.1.S1_at11/1111+10111373..10121816POT family protein, expressed
LOC_Os11g18044OsAffx.7137.1.S1_at7/1111+10111373..10121816POT family protein, expressed
LOC_Os11g18044OsAffx.18909.1.S1_x_at1/1111+10111373..10121816POT family protein, expressed
LOC_Os11g18070OsAffx.28025.3.S1_at11/1111+10134698..10137988hypothetical protein
LOC_Os11g18070Os.20978.1.S1_at1/1111+10134698..10137988hypothetical protein
LOC_Os11g18080OsAffx.31892.1.S1_x_at5/1111+10143068..10148047retrotransposon, putative, centromere-specific
LOC_Os11g18080OsAffx.31892.5.S1_x_at3/1111+10143068..10148047retrotransposon, putative, centromere-specific
LOC_Os11g18080OsAffx.31892.5.S1_at2/1111+10143068..10148047retrotransposon, putative, centromere-specific
LOC_Os11g18080OsAffx.6363.1.S1_at2/1111+10143068..10148047retrotransposon, putative, centromere-specific

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7137.1.S1_at--353--4311NONE
CCTATCGAGATCATATGGCTCGCTG
NONE
OsAffx.7137.1.S1_at--800--511NONE
ATCGAGATCATATGGCTCGCTGAAA
NONE
OsAffx.7137.1.S1_at--1130--6031NONE
GAGATCATATGGCTCGCTGAAAAGA
NONE
OsAffx.7137.1.S1_at--807--6431NONE
GATCATATGGCTCGCTGAAAAGAAA
NONE
OsAffx.7137.1.S1_at--316--3551Chr11:10113195..10113215 (21 bp)
CATATGGCTCGCTGAAAAGAAAAGT
LOC_Os11g18044
OsAffx.7137.1.S1_at--135--10111Chr11:10113195..10113217 (23 bp)
TATGGCTCGCTGAAAAGAAAAGTGT
LOC_Os11g18044
OsAffx.7137.1.S1_at--494--3751Chr11:10113198..10113222 (25 bp)
CTCGCTGAAAAGAAAAGTGTGGCCT
LOC_Os11g18044
OsAffx.7137.1.S1_at--659--2871Chr11:10113212..10113236 (25 bp)
AAGTGTGGCCTTATGGGAAATGGGA
LOC_Os11g18044
OsAffx.7137.1.S1_at--441--10091Chr11:10113223..10113247 (25 bp)
TATGGGAAATGGGAGTTGTCGGATC
LOC_Os11g18044
OsAffx.7137.1.S1_at--790--10811Chr11:10113238..10113262 (25 bp)
TTGTCGGATCTGGAGTTGCTTGTCA
LOC_Os11g18044
OsAffx.7137.1.S1_at--45--8731Chr11:10113239..10113263 (25 bp)
TGTCGGATCTGGAGTTGCTTGTCAG
LOC_Os11g18044
Target Sequence 
CCTATCGAGATCATATGGCTCGCTGAAAAGAAAAGTGTGGCCTTATGGGAAATGGGAGTTGTCGGATCTGGAGTTGCTTG
TCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7137.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis