Browse Element(s) Details


OsAffx.18914.1.S1_x_at

Description tigr:9639.m01678
TID=OsAffx.18914.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to isomultiflorenol synthase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g181944/11Cycloartenol synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g18140OsAffx.7139.1.S1_at11/1111+10185095..10193589carboxyl-terminal proteinase, putative, expressed
LOC_Os11g18160OsAffx.7140.1.S1_at11/1111+10199208..10201463hypothetical protein
LOC_Os11g18160OsAffx.13906.1.S1_at1/1111+10199208..10201463hypothetical protein
LOC_Os11g18170Os.49459.1.S1_at9/1111+10208348..10210791phospholipid hydroperoxide glutathione peroxidase, putative, expressed
LOC_Os11g18194OsAffx.31037.1.S1_x_at11/1111+10213730..10245275Cycloartenol synthase, putative, expressed
LOC_Os11g18194OsAffx.7141.1.S1_at11/1111+10213730..10245275Cycloartenol synthase, putative, expressed
LOC_Os11g18194Os.53034.1.A1_at11/1111+10213730..10245275Cycloartenol synthase, putative, expressed
LOC_Os11g18194OsAffx.18914.1.S1_x_at4/1111+10213730..10245275Cycloartenol synthase, putative, expressed
LOC_Os11g18220OsAffx.17052.2.S1_at11/1111+10248433..10249301hypothetical protein
LOC_Os11g18220OsAffx.17052.1.S1_at2/1111+10248433..10249301hypothetical protein
LOC_Os11g18220OsAffx.12861.2.S1_x_at1/1111+10248433..10249301hypothetical protein
LOC_Os11g18230OsAffx.18915.1.S1_at11/1111+10253690..10253968hypothetical protein
LOC_Os11g18240OsAffx.22699.1.S1_x_at2/1111+10258143..10263263retrotransposon protein, putative, unclassified
LOC_Os11g18240OsAffx.26189.1.S1_at1/1111+10258143..10263263retrotransposon protein, putative, unclassified
LOC_Os11g18250NANA11+10265313..10267321retrotransposon protein, putative, unclassified
LOC_Os11g18260OsAffx.940.1.S1_x_at2/1111+10268355..10271710hypothetical protein
LOC_Os11g18260Os.31845.1.S1_x_at1/1111+10268355..10271710hypothetical protein
LOC_Os11g18260Os.47114.1.S1_x_at1/1111+10268355..10271710hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0019745biological_processpentacyclic triterpenoid biosynthesis
GO:0016871molecular_functioncycloartenol synthase activity
GO:0042299molecular_functionlupeol synthase activity
GO:0042300molecular_functionbeta-amyrin synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18914.1.S1_x_at--271--2571Chr11:10245115..10245139 (25 bp)
AACGGCTTCCTAGGCAGGGCAGTGT
LOC_Os11g18194
OsAffx.18914.1.S1_x_at--243--5311Chr11:10245002..10245026 (25 bp)
GAAGGAGTCACAGGACCTCCTCATG
LOC_Os11g18194
OsAffx.18914.1.S1_x_at--684--3751NONE
CTCATGCGGATGCAGGCACTAGTCC
NONE
OsAffx.18914.1.S1_x_at--211--9611NONE
TCATGCGGATGCAGGCACTAGTCCC
NONE
OsAffx.18914.1.S1_x_at--871--9131NONE
TGCGGATGCAGGCACTAGTCCCCGT
NONE
OsAffx.18914.1.S1_x_at--778--7971NONE
GGATGCAGGCACTAGTCCCCGTAGT
NONE
OsAffx.18914.1.S1_x_at--947--631NONE
ATGCAGGCACTAGTCCCCGTAGTGG
NONE
OsAffx.18914.1.S1_x_at--1095--4991NONE
GCAGGCACTAGTCCCCGTAGTGGCC
NONE
OsAffx.18914.1.S1_x_at--125--3331NONE
CACTAGTCCCCGTAGTGGCCGGCGA
NONE
OsAffx.18914.1.S1_x_at--819--4131Chr11:10244285..10244309 (25 bp)
CCCCGCGGTAGCAGGCGACGGATTC
LOC_Os11g18194
OsAffx.18914.1.S1_x_at--856--3911Chr11:10244226..10244250 (25 bp)
CGGCCGCTCTAACCGATGCCGCTAC
LOC_Os11g18194
Target Sequence 
AACGGCTTCCTAGGCAGGGCAGTGTGGGAGTTCGATCCCGACGCCGGCACGCCGGAGGAGCGCGCCGAGGTGGCGAGGCT
GCGCCGCGACTTCACCCGCCACCGCTTCCAGAGGAAGGAGTCACAGGACCTCCTCATGCGGATGCAGGCACTAGTCCCCG
TAGTGGCCGGCGACGGATCCGGCATCCCCGCGGTAGCAGGCGACGGATTCGGCCTCCCGCTTGCCACACTGGCCGATGCC
GCCTCGGCCGCTCTAACCGATGCCGCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18914.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis