Browse Element(s) Details


OsAffx.18916.1.S1_at

Description tigr:9639.m01686
TID=OsAffx.18916.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1830011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g18250NANA11+10265313..10267321retrotransposon protein, putative, unclassified
LOC_Os11g18260OsAffx.940.1.S1_x_at2/1111+10268355..10271710hypothetical protein
LOC_Os11g18260Os.31845.1.S1_x_at1/1111+10268355..10271710hypothetical protein
LOC_Os11g18260Os.47114.1.S1_x_at1/1111+10268355..10271710hypothetical protein
LOC_Os11g18270NANA11+10273265..10274629hypothetical protein
LOC_Os11g18280Os.25754.2.S1_x_at2/1111+10276577..10277129hypothetical protein
LOC_Os11g18290OsAffx.20387.1.S1_x_at1/1111+10278082..10284483retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g18300OsAffx.18916.1.S1_at11/1111+10291297..10291992hypothetical protein
LOC_Os11g18310OsAffx.18917.1.S1_at3/1111+10299729..10300547Cycloartenol synthase, putative
LOC_Os11g18320OsAffx.18918.1.S1_at11/1111+10306734..10308857hypothetical protein
LOC_Os11g18320Os.55138.1.S1_x_at1/1111+10306734..10308857hypothetical protein
LOC_Os11g18330OsAffx.31038.1.S1_at10/1111+10311838..10312380hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18916.1.S1_at--1081--5771Chr11:10291516..10291540 (25 bp)
GAGCGGCCCGTTGGCCGCCGAAGAA
LOC_Os11g18300
OsAffx.18916.1.S1_at--538--7951Chr11:10291459..10291483 (25 bp)
GGATAGCGCGAAGGACTTGATCTCT
LOC_Os11g18300
OsAffx.18916.1.S1_at--549--9991Chr11:10291456..10291480 (25 bp)
TAGCGCGAAGGACTTGATCTCTCTC
LOC_Os11g18300
OsAffx.18916.1.S1_at--361--4571Chr11:10291454..10291478 (25 bp)
GCGCGAAGGACTTGATCTCTCTCCA
LOC_Os11g18300
OsAffx.18916.1.S1_at--272--8851Chr11:10291442..10291466 (25 bp)
TGATCTCTCTCCACCGCTTCTTGGT
LOC_Os11g18300
OsAffx.18916.1.S1_at--832--9091Chr11:10291407..10291431 (25 bp)
TGCTGCGTGATGGACGGCGCTCATA
LOC_Os11g18300
OsAffx.18916.1.S1_at--990--5731Chr11:10291395..10291419 (25 bp)
GACGGCGCTCATAGAGCGTGCAGCA
LOC_Os11g18300
OsAffx.18916.1.S1_at--438--8391Chr11:10291392..10291416 (25 bp)
GGCGCTCATAGAGCGTGCAGCAGCA
LOC_Os11g18300
OsAffx.18916.1.S1_at--193--4011Chr11:10291379..10291403 (25 bp)
CGTGCAGCAGCAGCGCGTTGATGTC
LOC_Os11g18300
OsAffx.18916.1.S1_at--190--8631Chr11:10291334..10291358 (25 bp)
TGGTGGTGTCCTATGGCTCGGTCCC
LOC_Os11g18300
OsAffx.18916.1.S1_at--449--7491Chr11:10291332..10291356 (25 bp)
GTGGTGTCCTATGGCTCGGTCCCAG
LOC_Os11g18300
Target Sequence 
GAGCGGCCCGTTGGCCGCCGAAGAAGCGGAGGAGGTGGCGGCGGCGCTGGTGGACGAGGATAGCGCGAAGGACTTGATCT
CTCTCCACCGCTTCTTGGTCCCCTCCACCTGCTGCGTGATGGACGGCGCTCATAGAGCGTGCAGCAGCAGCGCGTTGATG
TCGTCGCCGGAGCCGGAGTCGGTGGTGGTGTCCTATGGCTCGGTCCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18916.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis