Browse Element(s) Details


OsAffx.18917.1.S1_at

Description tigr:9639.m01687
TID=OsAffx.18917.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to beta-amyrin synthase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g183103/11Cycloartenol synthase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g18280Os.25754.2.S1_x_at2/1111+10276577..10277129hypothetical protein
LOC_Os11g18290OsAffx.20387.1.S1_x_at1/1111+10278082..10284483retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g18300OsAffx.18916.1.S1_at11/1111+10291297..10291992hypothetical protein
LOC_Os11g18310OsAffx.18917.1.S1_at3/1111+10299729..10300547Cycloartenol synthase, putative
LOC_Os11g18320OsAffx.18918.1.S1_at11/1111+10306734..10308857hypothetical protein
LOC_Os11g18320Os.55138.1.S1_x_at1/1111+10306734..10308857hypothetical protein
LOC_Os11g18330OsAffx.31038.1.S1_at10/1111+10311838..10312380hypothetical protein
LOC_Os11g18340NANA11+10320167..10320388lupeol synthase, putative

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Gene Ontology Classification
GO idTypeName
GO:0019745biological_processpentacyclic triterpenoid biosynthesis
GO:0016871molecular_functioncycloartenol synthase activity
GO:0042299molecular_functionlupeol synthase activity
GO:0042300molecular_functionbeta-amyrin synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18917.1.S1_at--132--7891Chr11:10306134..10306158 (25 bp)
GGTTATATTGTGGTGACGGCTTCTA
NONE
OsAffx.18917.1.S1_at--66--5751Chr11:10306120..10306144 (25 bp)
GACGGCTTCTAGTGTACAGCATGAC
NONE
OsAffx.18917.1.S1_at--630--6631Chr11:10305800..10305824 (25 bp)
GTTGTCAAAGATTCCTTCAAACCAA
NONE
OsAffx.18917.1.S1_at--644--6231Chr11:10305211..10305235 (25 bp)
GATGGCACATTGTCCTCGGCTGAAT
NONE
OsAffx.18917.1.S1_at--197--10831NONE
TTGGGTGGAGTTTATCAACCCTTCT
NONE
OsAffx.18917.1.S1_at--1019--3551Chr11:10302220..10302292 (25 bp)
CATCATTGTTGATTACCCGTTCCAA
NONE
OsAffx.18917.1.S1_at--587--7751Chr11:10302175..10302198 (24 bp)
GGTGTTCCACCAATTAATATGCAGA
NONE
OsAffx.18917.1.S1_at--515--6911Chr11:10300569..10300593 (25 bp)
GTATGTCGACAGTGGAAGGCCTCAT
NONE
OsAffx.18917.1.S1_at--906--2251Chr11:10300377..10300401 (25 bp)
AAATAGATCCAATACCGCTACACCG
LOC_Os11g18310
OsAffx.18917.1.S1_at--188--4131Chr11:10300362..10300386 (25 bp)
CGCTACACCGTGCTGCAATGGAATT
LOC_Os11g18310
OsAffx.18917.1.S1_at--355--9271Chr11:10299800..10299824 (25 bp)
TCCTCCTTGTTCTTCAATTACCCAA
LOC_Os11g18310
Target Sequence 
GGTTATATTGTGGTGACGGCTTCTAGTGTACAGCATGACAGAAAACGTAGAGCGATATTGTTGTTGTCAAAGATTCCTTC
AAACCAAGTAGGAGATTCTATAAAAGAAGAAAGGTTGTTTGATGCCGTTGACTGCCTACTTTCATTTGTGAACAAGGATG
GCACATTGTCCTCGGCTGAATCTAAGAGAACAACTCCTTGGGTGGAGTTTATCAACCCTTCTGAGAGTTTCCGGAACATC
ATTGTTGATTACCCGTTCCAACTTATAACGGAACTAACCCGAGGTGTTCCACCAATTAATATGCAGAAGTATGTCGACAG
TGGAAGGCCTCATGCAGTGAACACTGCGTGGGCAATGTTGGGTCTGATATATGCTGGACATGTTGAAATAGATCCAATAC
CGCTACACCGTGCTGCAATGGAATTAATCAACATGCAACTGGATACAGGAGAATTTCCACAACAAGAAATAGTCGGGAGC
TTCAATTCCTCCTTGTTCTTCAATTACCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18917.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis