Browse Element(s) Details


OsAffx.18935.1.S1_at

Description tigr:9639.m01769
TID=OsAffx.18935.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1905011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g19000NANA11+10814264..10814881transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g19010NANA11+10816380..10817165transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g19020NANA11+10817680..10818980hypothetical protein
LOC_Os11g19030OsAffx.20725.4.S1_at11/1111+10823173..10833313hypothetical protein
LOC_Os11g19030OsAffx.20725.4.S1_x_at10/1111+10823173..10833313hypothetical protein
LOC_Os11g19030OsAffx.20725.3.S1_x_at3/1111+10823173..10833313hypothetical protein
LOC_Os11g19030OsAffx.20725.1.S1_at2/1111+10823173..10833313hypothetical protein
LOC_Os11g19030OsAffx.20725.1.S1_x_at1/1111+10823173..10833313hypothetical protein
LOC_Os11g19040OsAffx.18934.1.S1_x_at4/1111+10834093..10834353hypothetical protein
LOC_Os11g19050OsAffx.18935.1.S1_at11/1111+10837604..10838558hypothetical protein
LOC_Os11g19060OsAffx.18936.1.S1_at11/1111+10841051..10845913AP2/EREBP transcription factor BABY BOOM, putative, expressed
LOC_Os11g19070OsAffx.18937.1.S1_at11/1111+10849054..10849819hypothetical protein
LOC_Os11g19080NANA11+10851577..10854656hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18935.1.S1_at--836--5571Chr11:10838130..10838154 (25 bp)
GAAAGGGTGGCTGCATCTCCGTCAA
LOC_Os11g19050
OsAffx.18935.1.S1_at--805--8931Chr11:10837998..10838022 (25 bp)
TGACCCTGTGCCCATTGGCTCATGC
LOC_Os11g19050
OsAffx.18935.1.S1_at--242--5831Chr11:10837928..10837952 (25 bp)
GACCGTCAGCTTGGGACTCGCCGTG
LOC_Os11g19050
OsAffx.18935.1.S1_at--318--5111Chr11:10837900..10837924 (25 bp)
GCACTCATCGGCTCTACTCCAGTGG
LOC_Os11g19050
OsAffx.18935.1.S1_at--228--1091Chr11:10837880..10837904 (25 bp)
AGTGGCCCTCTGTTCAGTGGCGGCA
LOC_Os11g19050
OsAffx.18935.1.S1_at--271--1671Chr11:10837856..10837880 (25 bp)
AGCCCTCCTCTTGGCGGTGGCAGTG
LOC_Os11g19050
OsAffx.18935.1.S1_at--375--6091Chr11:10837829..10837853 (25 bp)
GAGTCAGCGTAGACAACGGCCACGG
LOC_Os11g19050
OsAffx.18935.1.S1_at--1044--10651Chr11:10837723..10837747 (25 bp)
TTCCTTGGCTTTGAGCGAACGCGCG
LOC_Os11g19050
OsAffx.18935.1.S1_at--1155--10071Chr11:10837673..10837697 (25 bp)
TAGGATGATGCAGTGTGCCGTCGCC
LOC_Os11g19050
OsAffx.18935.1.S1_at--584--4531Chr11:10837651..10837675 (25 bp)
GCCGCCATGATGGATCGGGCCCTTG
LOC_Os11g19050
OsAffx.18935.1.S1_at--608--831Chr11:10837642..10837666 (25 bp)
ATGGATCGGGCCCTTGTTCACCTCG
LOC_Os11g19050
Target Sequence 
GAAAGGGTGGCTGCATCTCCGTCAAGGCCCGCGCCATCGACACCCGCCGTTCCCGCTTTGTCGATGTGCTCGTCGGCTCG
GCAACCGCTCGCCCTGCTTCTGTCAGCTCCGCATCGGCCCCGCGACCCCCACTGACCCTGTGCCCATTGGCTCATGCGCT
CGCTGGCCCCTCACCCTTTGGCTCAGCGCCTGTCGGCCCCGCGACCGTCAGCTTGGGACTCGCCGTGCCCGCACTCATCG
GCTCTACTCCAGTGGCCCTCTGTTCAGTGGCGGCAGCCCTCCTCTTGGCGGTGGCAGTGGAGAGTCAGCGTAGACAACGG
CCACGGCTCGGGCGAGGCATTGAGGAAGGTGTTGAAGTTGGTGGCGTTGAGGTCGACGATGGCGTTGGTGTTGACCTCCC
CCGCGCCTTCCTTGGCTTTGAGCGAACGCGCGGCGCCGCAACGAGGGAGGCGGCGACTAGGATGATGCAGTGTGCCGTCG
CCGCCATGATGGATCGGGCCCTTGTTCACCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18935.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis