Browse Element(s) Details


OsAffx.19001.1.S1_at

Description tigr:9639.m02223
TID=OsAffx.19001.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AY085111 leucoanthocyanidin dioxygenase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2506010/11oxidoreductase, 2OG-Fe oxygenase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g25040OsAffx.19000.1.S1_at11/1111+13767493..13768707uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os11g25050NANA11+13769782..13775137retrotransposon protein, putative, unclassified, expressed
LOC_Os11g25060OsAffx.19001.1.S1_at10/1111+13784878..13790594oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os11g25070Os.40360.1.S1_x_at1/1111+13791352..13795078retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g25070Os.17546.2.S1_x_at1/1111+13791352..13795078retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g25080OsAffx.28061.1.S1_at4/1111+13799585..13799992hypothetical protein
LOC_Os11g25090Os.49351.2.S1_x_at3/1111+13801693..13802205hypothetical protein
LOC_Os11g25100Os.49351.1.S1_at10/1111+13802839..13803422Tropinone reductase homolog At1g07440, putative
LOC_Os11g25110OsAffx.31124.1.S1_at11/1111+13807909..13809148hypothetical protein
LOC_Os11g25110Os.34727.1.S1_at1/1111+13807909..13809148hypothetical protein
LOC_Os11g25120NANA11+13809535..13811135transposon protein, putative, Mutator sub-class
LOC_Os11g25130OsAffx.19002.1.S1_at11/1111+13812581..13813549expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009813biological_processflavonoid biosynthesis
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19001.1.S1_at--329--1691Chr11:13786406..13786430 (25 bp)
AGCCATGTCGCTGAGCTTGGGATTA
LOC_Os11g25060
OsAffx.19001.1.S1_at--294--10451Chr11:13786428..13786452 (25 bp)
TTAGGTGAGAACCAACTCCACGCGG
LOC_Os11g25060
OsAffx.19001.1.S1_at--440--3931Chr11:13786477..13786501 (25 bp)
CGGCGTGCATGCGAGTGAACTACTA
LOC_Os11g25060
OsAffx.19001.1.S1_at--1074--1671Chr11:13786516..13786540 (25 bp)
AGCCGGAGCTAACGCTGGGCATCTC
LOC_Os11g25060
OsAffx.19001.1.S1_at--863--10571Chr11:13786573..13786597 (25 bp)
TTCTCGCCGACGACCGTGTGAAGGG
LOC_Os11g25060
OsAffx.19001.1.S1_at--409--5631Chr11:13786617..13786641 (25 bp)
GACACGTGGTACACGGTGCAGCCGA
LOC_Os11g25060
OsAffx.19001.1.S1_at--730--6371Chr11:13786640..13786664 (25 bp)
GATCCCCAATGCATTTCTAGTCAAC
LOC_Os11g25060
OsAffx.19001.1.S1_at--817--6611NONE
GTTGGCGACCAGATTCAGATCATAA
NONE
OsAffx.19001.1.S1_at--35--1191Chr11:13790316..13790340 (25 bp)
AGTACCGCAGGTTCTCCCGCAGGAG
LOC_Os11g25060
OsAffx.19001.1.S1_at--210--2871Chr11:13790524..13790548 (25 bp)
AAGTGGAACTTATTGCCTACCGAGA
LOC_Os11g25060
OsAffx.19001.1.S1_at--997--4451Chr11:13790538..13790562 (25 bp)
GCCTACCGAGATGCACAGATCAACT
LOC_Os11g25060
Target Sequence 
AGCCATGTCGCTGAGCTTGGGATTAGGTGAGAACCAACTCCACGCGGCCTTCGGCAGCGACGACGGCATCTCGGCGTGCA
TGCGAGTGAACTACTACCCCAAGTGCCCCCAGCCGGAGCTAACGCTGGGCATCTCCTCCCACTCCGACGCCGGCGGCATC
GCCGTGCTTCTCGCCGACGACCGTGTGAAGGGGACGCAGGTGCTAAAGGGGGACACGTGGTACACGGTGCAGCCGATCCC
CAATGCATTTCTAGTCAACGTTGGCGACCAGATTCAGATCATAAGCAACGACAAGTACAAGAGCGTGGAGCACCGCGCAG
TGGCGAGCTCCGATGACGCGCGGTTCACCGTCGCCTTCTTCTGCAACCCTAGCGGGAACCTTCCGATCGGCCCGGCAGCT
CAGCTGGTGAGCTCGCAGTCGCCGGCGCTCTACACGCCCATCGTCTTCGACGAGTACCGCAGGTTCTCCCGCAGGAGGGG
GCTCAAAGGGAAGTCCCAGCTCGAGGCCATGAAGAACAGCAAGATAGCTCAAGTGGAACTTATTGCCTACCGAGATGCAC
AGATCAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19001.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis