Browse Element(s) Details


Os.49351.1.S1_at

Description gb:AK073048.1
DB_XREF= gi:32983071
TID=Os.49351.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49351 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033007C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033007C03, full insert sequence.
FL= gb:AK073048.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2510010/11Tropinone reductase homolog At1g07440, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g25060OsAffx.19001.1.S1_at10/1111+13784878..13790594oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os11g25070Os.40360.1.S1_x_at1/1111+13791352..13795078retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g25070Os.17546.2.S1_x_at1/1111+13791352..13795078retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g25080OsAffx.28061.1.S1_at4/1111+13799585..13799992hypothetical protein
LOC_Os11g25090Os.49351.2.S1_x_at3/1111+13801693..13802205hypothetical protein
LOC_Os11g25100Os.49351.1.S1_at10/1111+13802839..13803422Tropinone reductase homolog At1g07440, putative
LOC_Os11g25110OsAffx.31124.1.S1_at11/1111+13807909..13809148hypothetical protein
LOC_Os11g25110Os.34727.1.S1_at1/1111+13807909..13809148hypothetical protein
LOC_Os11g25120NANA11+13809535..13811135transposon protein, putative, Mutator sub-class
LOC_Os11g25130OsAffx.19002.1.S1_at11/1111+13812581..13813549expressed protein
LOC_Os11g25140OsAffx.19003.1.S1_at7/1111+13815714..13816764hypothetical protein
LOC_Os11g25140OsAffx.1198.1.S1_at4/1111+13815714..13816764hypothetical protein
LOC_Os11g25150OsAffx.19004.1.S1_at11/1111+13827892..13828384hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49351.1.S1_at--667--5971Chr11:13802832..13802856 (25 bp)
GAGAAACATGGCAAGCAGTGGCGCC
NONE
Os.49351.1.S1_at--845--8631Chr11:13803072..13803096 (25 bp)
TGGGTTCGGCTCGACGGTGCACACC
LOC_Os11g25100
Os.49351.1.S1_at--46--7171Chr11:13803160..13803184 (25 bp)
GTCTCCTTCTCTGTCTGCGACGTGT
LOC_Os11g25100
Os.49351.1.S1_at--620--4811Chr11:13803228..13803252 (25 bp)
GCTCTTCGGCGGCAAACTCAATATC
LOC_Os11g25100
Os.49351.1.S1_at--846--8351Chr11:13803235..13803259 (25 bp)
GGCGGCAAACTCAATATCCTTGTAA
LOC_Os11g25100
Os.49351.1.S1_at--1129--7051Chr11:13803256..13803280 (25 bp)
GTAAGTCTCATAATCTCTTGCCACC
LOC_Os11g25100
Os.49351.1.S1_at--722--9571Chr11:13803271..13803295 (25 bp)
TCTTGCCACCATGATTTCCAGCGAT
LOC_Os11g25100
Os.49351.1.S1_at--325--6531Chr11:13803283..13803307 (25 bp)
GATTTCCAGCGATCCAACGGTATAT
LOC_Os11g25100
Os.49351.1.S1_at--1089--7571Chr11:13803320..13803344 (25 bp)
GGGCTGTTCACATTGCACCCACCTA
LOC_Os11g25100
Os.49351.1.S1_at--515--4513Chr11:13803334..13803358 (25 bp)
GCACCCACCTAACAAGTTCAAACAA
LOC_Os11g25100
Os.49351.1.S1_at--140--2231Chr11:13803355..13803379 (25 bp)
ACAAGTTCATGTACCTCTGATGTAA
LOC_Os11g25100
Target Sequence 
GAGAAACATGGCAAGCAGTGGCGCCGGGAGAGACGAGAGGTGGATCCTCGCCGGCGCCACCGCGCTAGTCACCGGCCGCA
GCAAAGGCATCGGCCGCGCCATCGTGGAGGAGCTCGTTGGGTTCGGCTCGACGGTGCACACCTGCGCCCGTAGCGAGGCG
GAGCTGAGCAGATGCCAGGAGGAATTGACGGCCAAGGGCCTCGCCGTCTCCTTCTCTGTCTGCGACGTGTCGGTGCGCAC
TGACAGGGAGGAGCTCGTCAGCAGGGTGCGCGAGCTCTTCGGCGGCAAACTCAATATCCTTGTAAGTCTCATAATCTCTT
GCCACCATGATTTCCAGCGATCCAACGGTATATGTAAAATAAGGGGGGCTGTTCACATTGCACCCACCTAACAAGTTCAA
ACAAGTTCATGTACCTCTGATGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49351.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis