Browse Element(s) Details


OsAffx.19003.1.S1_at

Description tigr:9639.m02231
TID=OsAffx.19003.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g251407/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g25070Os.40360.1.S1_x_at1/1111+13791352..13795078retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g25070Os.17546.2.S1_x_at1/1111+13791352..13795078retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g25080OsAffx.28061.1.S1_at4/1111+13799585..13799992hypothetical protein
LOC_Os11g25090Os.49351.2.S1_x_at3/1111+13801693..13802205hypothetical protein
LOC_Os11g25100Os.49351.1.S1_at10/1111+13802839..13803422Tropinone reductase homolog At1g07440, putative
LOC_Os11g25110OsAffx.31124.1.S1_at11/1111+13807909..13809148hypothetical protein
LOC_Os11g25110Os.34727.1.S1_at1/1111+13807909..13809148hypothetical protein
LOC_Os11g25120NANA11+13809535..13811135transposon protein, putative, Mutator sub-class
LOC_Os11g25130OsAffx.19002.1.S1_at11/1111+13812581..13813549expressed protein
LOC_Os11g25140OsAffx.19003.1.S1_at7/1111+13815714..13816764hypothetical protein
LOC_Os11g25140OsAffx.1198.1.S1_at4/1111+13815714..13816764hypothetical protein
LOC_Os11g25150OsAffx.19004.1.S1_at11/1111+13827892..13828384hypothetical protein
LOC_Os11g25160OsAffx.31125.1.S1_at11/1111+13829257..13830225expressed protein
LOC_Os11g25170Os.20079.1.S1_s_at11/1111+13830394..13835900Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os11g25170Os.20079.1.S2_at10/1111+13830394..13835900Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os11g25180Os.47463.1.S1_x_at4/1111+13841378..13848256transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g25180Os.14491.2.S1_x_at3/1111+13841378..13848256transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19003.1.S1_at--757--5291Chr11:13816672..13816696 (25 bp)
GAAGGCGGCAGGCTACGGCGAAGGT
LOC_Os11g25140
OsAffx.19003.1.S1_at--168--3672Chr11:13816618..13816642 (25 bp)
CTTTTATAGGGCTAAGCGGCGGCGA
LOC_Os11g25140
OsAffx.19003.1.S1_at--30--6251NONE
GATGGAAAGCTCTAGGTGTTACCTC
NONE
OsAffx.19003.1.S1_at--416--8151NONE
GGAAAGCTCTAGGTGTTACCTCCTC
NONE
OsAffx.19003.1.S1_at--962--2331NONE
AAAGCTCTAGGTGTTACCTCCTCAA
NONE
OsAffx.19003.1.S1_at--259--1591NONE
AGCTCTAGGTGTTACCTCCTCAAGG
NONE
OsAffx.19003.1.S1_at--958--9531Chr11:13815776..13816075 (25 bp)
TCTAGGTGTTACCTCCTCAAGGAGT
LOC_Os11g25140
OsAffx.19003.1.S1_at--439--1051Chr11:13815773..13815795 (23 bp)
AGGTGTTACCTCCTCAAGGAGTGGC
LOC_Os11g25140
OsAffx.19003.1.S1_at--1022--8771Chr11:13815770..13815794 (25 bp)
TGTTACCTCCTCAAGGAGTGGCGTC
LOC_Os11g25140
OsAffx.19003.1.S1_at--960--9251Chr11:13815763..13815787 (25 bp)
TCCTCAAGGAGTGGCGTCCTGGTGA
LOC_Os11g25140
OsAffx.19003.1.S1_at--337--991Chr11:13815757..13815781 (25 bp)
AGGAGTGGCGTCCTGGTGAGGCCTG
LOC_Os11g25140
Target Sequence 
GAAGGCGGCAGGCTACGGCGAAGGTGGCGGTGAAAAGAGGAGGTCCCAAGGGTCCTTTTATAGGGCTAAGCGGCGGCGAT
GGAGGCCCATGGCCGGCGGCAAGGAGATGGAAAGCTCTAGGTGTTACCTCCTCAAGGAGTGGCGTCCTGGTGAGGCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19003.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis