Browse Element(s) Details


OsAffx.31125.1.S1_at

Description tigr:9639.m02233
TID=OsAffx.31125.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2516011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g25110OsAffx.31124.1.S1_at11/1111+13807909..13809148hypothetical protein
LOC_Os11g25110Os.34727.1.S1_at1/1111+13807909..13809148hypothetical protein
LOC_Os11g25120NANA11+13809535..13811135transposon protein, putative, Mutator sub-class
LOC_Os11g25130OsAffx.19002.1.S1_at11/1111+13812581..13813549expressed protein
LOC_Os11g25140OsAffx.19003.1.S1_at7/1111+13815714..13816764hypothetical protein
LOC_Os11g25140OsAffx.1198.1.S1_at4/1111+13815714..13816764hypothetical protein
LOC_Os11g25150OsAffx.19004.1.S1_at11/1111+13827892..13828384hypothetical protein
LOC_Os11g25160OsAffx.31125.1.S1_at11/1111+13829257..13830225expressed protein
LOC_Os11g25170Os.20079.1.S1_s_at11/1111+13830394..13835900Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os11g25170Os.20079.1.S2_at10/1111+13830394..13835900Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os11g25180Os.47463.1.S1_x_at4/1111+13841378..13848256transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g25180Os.14491.2.S1_x_at3/1111+13841378..13848256transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g25190NANA11+13855170..13856962transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31125.1.S1_at--706--9331Chr11:13829427..13829451 (25 bp)
TCGCCTGCACGGCAATGTTAGCAGC
LOC_Os11g25160
OsAffx.31125.1.S1_at--660--831Chr11:13829477..13829501 (25 bp)
ATGGAGCGGGCACTGCAACCTACGA
LOC_Os11g25160
OsAffx.31125.1.S1_at--418--1751Chr11:13829494..13829516 (23 bp)
ACCTACGACCGCGAGAGGCTGGTTG
LOC_Os11g25160
OsAffx.31125.1.S1_at--188--671Chr11:13829920..13829944 (25 bp)
ATGAATGGATCTCCTTCTCTATCAC
LOC_Os11g25160
OsAffx.31125.1.S1_at--1110--10251Chr11:13830042..13830066 (25 bp)
TTTGTTGGCCTTCTGGCGATTGATC
LOC_Os11g25160
OsAffx.31125.1.S1_at--278--8831Chr11:13830062..13830086 (25 bp)
TGATCACGCTTAGGGACGGTCGGCT
LOC_Os11g25160
OsAffx.31125.1.S1_at--793--7451Chr11:13830095..13830119 (25 bp)
GTGTCTTCTCTATTGTGTGTTGTGA
LOC_Os11g25160
OsAffx.31125.1.S1_at--682--10831Chr11:13830114..13830138 (25 bp)
TTGTGAGGAGCTGCCAACTCTTGAC
LOC_Os11g25160
OsAffx.31125.1.S1_at--141--2011Chr11:13830130..13830154 (25 bp)
ACTCTTGACGGCGATGCGTTTTTCT
LOC_Os11g25160
OsAffx.31125.1.S1_at--1035--10311Chr11:13830160..13830184 (25 bp)
TTTACGGGTTACAACCTCGCAGAGT
LOC_Os11g25160
OsAffx.31125.1.S1_at--697--2211Chr11:13830170..13830194 (25 bp)
ACAACCTCGCAGAGTTGCATCGTCT
LOC_Os11g25160
Target Sequence 
TCGCCTGCACGGCAATGTTAGCAGCGAGGAGGGGGACGATGCAGATGATGATGGAGCGGGCACTGCAACCTACGACCGCG
AGAGGCTGGTTGTGACAAGGGATGAATGGATCTCCTTCTCTATCACCCTCTTCCTCCTTTCAACTCCTCTTCCCTCTTTG
TTGGCCTTCTGGCGATTGATCACGCTTAGGGACGGTCGGCTTGGTGCTAGTGTCTTCTCTATTGTGTGTTGTGAGGAGCT
GCCAACTCTTGACGGCGATGCGTTTTTCTTTGTTTTTACGGGTTACAACCTCGCAGAGTTGCATCGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31125.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis