Browse Element(s) Details


Os.20079.1.S2_at

Description gb:AK063434.1
DB_XREF= gi:32973452
TID=Os.20079.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.20079 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033046I10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-115-E03, full insert sequence.
FL= gb:AK063434.1 gb:AK073524.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2517010/11Tropinone reductase homolog At1g07440, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g25110OsAffx.31124.1.S1_at11/1111+13807909..13809148hypothetical protein
LOC_Os11g25110Os.34727.1.S1_at1/1111+13807909..13809148hypothetical protein
LOC_Os11g25120NANA11+13809535..13811135transposon protein, putative, Mutator sub-class
LOC_Os11g25130OsAffx.19002.1.S1_at11/1111+13812581..13813549expressed protein
LOC_Os11g25140OsAffx.19003.1.S1_at7/1111+13815714..13816764hypothetical protein
LOC_Os11g25140OsAffx.1198.1.S1_at4/1111+13815714..13816764hypothetical protein
LOC_Os11g25150OsAffx.19004.1.S1_at11/1111+13827892..13828384hypothetical protein
LOC_Os11g25160OsAffx.31125.1.S1_at11/1111+13829257..13830225expressed protein
LOC_Os11g25170Os.20079.1.S1_s_at11/1111+13830394..13835900Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os11g25170Os.20079.1.S2_at10/1111+13830394..13835900Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os11g25180Os.47463.1.S1_x_at4/1111+13841378..13848256transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g25180Os.14491.2.S1_x_at3/1111+13841378..13848256transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g25190NANA11+13855170..13856962transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g25200NANA11+13857349..13857853transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007568biological_processaging
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20079.1.S2_at--867--6411NONE
GATCTAGGACGCAAGTGCCACGGGA
NONE
Os.20079.1.S2_at--1047--7271Chr11:13835476..13835500 (25 bp)
GTGCCACGGGATTTGAGATGTCCAT
LOC_Os11g25170
Os.20079.1.S2_at--475--7271Chr11:13835495..13835519 (25 bp)
GTCCATGCCCGATCTGAACGTGTAA
LOC_Os11g25170
Os.20079.1.S2_at--974--3091Chr11:13835563..13835587 (25 bp)
AATAGCGTCGGCAAGCAATGGCACC
LOC_Os11g25170
Os.20079.1.S2_at--30--1731Chr11:13835585..13835609 (25 bp)
ACCAGGGCCAGGATGTTGACAGATC
LOC_Os11g25170
Os.20079.1.S2_at--620--5651Chr11:13835602..13835626 (25 bp)
GACAGATCAGATCGATTGGCTCTAG
LOC_Os11g25170
Os.20079.1.S2_at--851--5171Chr11:13835690..13835714 (25 bp)
GCAAGAGTTCATACCGCATATCAAG
LOC_Os11g25170
Os.20079.1.S2_at--840--4071Chr11:13835717..13835741 (25 bp)
CGACGCATTGCGGTTTTTTGTTTAG
LOC_Os11g25170
Os.20079.1.S2_at--649--5191Chr11:13835773..13835797 (25 bp)
GCAATAGTCTTGTAGTCTTTTCATT
LOC_Os11g25170
Os.20079.1.S2_at--627--10051Chr11:13835811..13835835 (25 bp)
TAGTTTTCATGTAACCTCTGGTAGT
LOC_Os11g25170
Os.20079.1.S2_at--982--8051Chr11:13835846..13835870 (25 bp)
GGAGACCAGATTACTATCCATTATC
LOC_Os11g25170
Target Sequence 
GATCTAGGACGCAAGTGCCACGGGATTTGAGATGTCCATGCCCGATCTGAACGTGTAATCGCAAACTACATTAAAAGGCT
TCTTCTTCTCTGCCTCCACTGAATAGCGTCGGCAAGCAATGGCACCAGGGCCAGGATGTTGACAGATCAGATCGATTGGC
TCTAGCCNATGGCAAGGACAAGGTGGCAAAAGGAGCTCATCACATATGATCAGAACGTCGTGAGGGGTGCAAGAGTTCAT
ACCGCATATCAAGATCGACGCATTGCGGTTTTTTGTTTAGCATGACTCGTTATTAAATAGGAGAAGGCCANAGCAATAGT
CTTGTAGTCTTTTCATTTTCTTTTTTGTTTTAGTTTTCATGTAACCTCTGGTAGTGTGTGGATATGGAGACCAGATTACT
ATCCATTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20079.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis