Browse Element(s) Details


OsAffx.19018.1.S1_at

Description tigr:9639.m02307
TID=OsAffx.19018.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2592011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g25890OsAffx.31136.1.S1_at11/1111+14269882..14270094hypothetical protein
LOC_Os11g25900OsAffx.19019.1.S1_at11/1111+14275096..14276259hAT family dimerisation domain containing protein, putative
LOC_Os11g25910OsAffx.31135.1.S1_at11/1111+14282539..14283151hypothetical protein
LOC_Os11g25910OsAffx.31135.1.S1_x_at11/1111+14282539..14283151hypothetical protein
LOC_Os11g25920OsAffx.19018.1.S1_at11/1111+14285190..14289613expressed protein
LOC_Os11g25920OsAffx.19018.1.S1_x_at11/1111+14285190..14289613expressed protein
LOC_Os11g25930NANA11+14291168..14295196retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g25940NANA11+14296810..14297211retrotransposon protein, putative, unclassified
LOC_Os11g25950OsAffx.31069.1.S1_x_at2/1111+14298165..14301032retrotransposon protein, putative, unclassified
LOC_Os11g25950Os.53479.1.S1_x_at1/1111+14298165..14301032retrotransposon protein, putative, unclassified
LOC_Os11g25950OsAffx.31069.2.S1_x_at1/1111+14298165..14301032retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19018.1.S1_at--768--4691Chr11:14288910..14288934 (25 bp)
GCGGCAAGGATGAGAGCCACCTGTT
LOC_Os11g25920
OsAffx.19018.1.S1_at--1086--5171Chr11:14288913..14288937 (25 bp)
GCAAGGATGAGAGCCACCTGTTCCA
LOC_Os11g25920
OsAffx.19018.1.S1_at--720--2911Chr11:14288915..14288939 (25 bp)
AAGGATGAGAGCCACCTGTTCCATC
LOC_Os11g25920
OsAffx.19018.1.S1_at--732--991Chr11:14288916..14288940 (25 bp)
AGGATGAGAGCCACCTGTTCCATCT
LOC_Os11g25920
OsAffx.19018.1.S1_at--273--6311Chr11:14288918..14288942 (25 bp)
GATGAGAGCCACCTGTTCCATCTCC
LOC_Os11g25920
OsAffx.19018.1.S1_at--421--9671Chr11:14289090..14289114 (25 bp)
TCACCGGCCGGACCGAGGACGCGAA
LOC_Os11g25920
OsAffx.19018.1.S1_at--70--1691Chr11:14289224..14289248 (25 bp)
AGCCTGGAGAGCCACTCCAACAAGG
LOC_Os11g25920
OsAffx.19018.1.S1_at--325--8551Chr11:14289228..14289252 (25 bp)
TGGAGAGCCACTCCAACAAGGCGAG
LOC_Os11g25920
OsAffx.19018.1.S1_at--949--831Chr11:14289257..14289281 (25 bp)
ATGGAGAGCGCCCAGAGCACCAAGT
LOC_Os11g25920
OsAffx.19018.1.S1_at--991--8531Chr11:14289258..14289282 (25 bp)
TGGAGAGCGCCCAGAGCACCAAGTT
LOC_Os11g25920
OsAffx.19018.1.S1_at--1037--5991Chr11:14289260..14289284 (25 bp)
GAGAGCGCCCAGAGCACCAAGTTCA
LOC_Os11g25920
Target Sequence 
GCGGCAAGGATGAGAGCCACCTGTTCCATCTCCCGCCGGCGGCGGCGGCCAAGCAGCCGCAGCACATGGACGAGCACCAC
CACCACCAGCAGCAGCCGATGGCGGCGCCGCAGCAGCACGGCGGGGAGGCGCCCGAGGGCGACCTGAAATGGCCCAACGG
GCTGTCGTTCTTCACCGCGCTCACCGGCCGGACCGAGGACGCGAAGTTCCTCTTCGGCGGCGGCGGAGGCGGCGGCGCGG
ACGACGGGAGCAAGACGGCGGCGGCGGCGCAGGACGCGGGGCACGGCGGCGCGGAGAACGTGGAGGAGTACCTGAGCCTG
GAGAGCCACTCCAACAAGGCGAGGAGGATGGAGAGCGCCCAGAGCACCAAGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19018.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis