Browse Element(s) Details


OsAffx.19020.1.S1_at

Description tigr:9639.m02311
TID=OsAffx.19020.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2588010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g25820NANA11+14225783..14226127hypothetical protein
LOC_Os11g25830NANA11+14226948..14228538retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g25840NANA11+14231266..14231787hypothetical protein
LOC_Os11g25850NANA11+14232610..14235100transposon protein, putative, unclassified
LOC_Os11g25860Os.18316.1.S1_at11/1111+14237401..14240211protein kinase family protein, putative, expressed
LOC_Os11g25870NANA11+14242076..14242776hypothetical protein
LOC_Os11g25874NANA11+14247701..14249116hypothetical protein
LOC_Os11g25880OsAffx.19020.1.S1_at10/1111+14250021..14253337hypothetical protein
LOC_Os11g25890OsAffx.31136.1.S1_at11/1111+14269882..14270094hypothetical protein
LOC_Os11g25900OsAffx.19019.1.S1_at11/1111+14275096..14276259hAT family dimerisation domain containing protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19020.1.S1_at--42--1771Chr11:14251752..14251776 (25 bp)
ACCTGTGCAACTGTGGGTGATGCCA
LOC_Os11g25880
OsAffx.19020.1.S1_at--191--2931NONE
AAGGCTTGAGTCGAAGCTTCCACCT
NONE
OsAffx.19020.1.S1_at--1070--8711Chr11:14252530..14252554 (25 bp)
TGTCTGGCGATCCTCTTCGACGATT
LOC_Os11g25880
OsAffx.19020.1.S1_at--206--1891Chr11:14252549..14252573 (25 bp)
ACGATTGCCACCTGATCGGCTTCAA
LOC_Os11g25880
OsAffx.19020.1.S1_at--858--8291Chr11:14252566..14252586 (21 bp)
GGCTTCAACCTCCATGTCAAGCGGG
LOC_Os11g25880
OsAffx.19020.1.S1_at--1029--2671Chr11:14252689..14252712 (24 bp)
AAGCGGGCTCGGTCGACCTTCATAG
LOC_Os11g25880
OsAffx.19020.1.S1_at--4--5831Chr11:14252702..14252726 (25 bp)
GACCTTCATAGGATGCCTCCAACAA
LOC_Os11g25880
OsAffx.19020.1.S1_at--981--9831Chr11:14252778..14252802 (25 bp)
TAAAGGCCCTGCGACATGCGACATG
LOC_Os11g25880
OsAffx.19020.1.S1_at--161--3871Chr11:14253179..14253203 (25 bp)
CTGTATATATCAAGCTCTCTCACCG
LOC_Os11g25880
OsAffx.19020.1.S1_at--342--7331Chr11:14253243..14253267 (25 bp)
GTGCAGGACATGGTACATACGGCAT
LOC_Os11g25880
OsAffx.19020.1.S1_at--706--3431Chr11:14253282..14253306 (25 bp)
CAGTAGTTGGCGACGTTGGGCTCAC
LOC_Os11g25880
Target Sequence 
ACCTGTGCAACTGTGGGTGATGCCAAGGCTTGAGTCGAAGCTTCCACCTCGGGGTGCTTCGCTGTCTGGCGATCCTCTTC
GACGATTGCCACCTGATCGGCTTCAACCTCCATGTCAAGCGGGCTCGGTCGACCTTCATAGGATGCCTCCAACAACTTCT
ATTTTTGAAAAATCGCAGTTTTGTATCACTAATATCGATCAGAAACTAAAGGCCCTGCGACATGCGACATGCCTGAACAG
GCCCTTCTGGAAGAATTCAGCTGCAAAAGCAAAAGCGGAGATGAAGAACTGGTTAAGAGCACATAGGAAAAAAATTAAAG
TGCTGATCTTGTTTCTGCAAGTGATTAATGTGCTGTATATATCAAGCTCTCTCACCGCAGAAAGAGAAACAAAGGGGCTT
GCAGGACACCAGGAGGGTGCAGGACATGGTACATACGGCATGAAAAGAGCTCTGCCAGTAGTTGGCGACGTTGGGCTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19020.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis