Browse Element(s) Details


OsAffx.19035.1.S1_at

Description tigr:9639.m02425
TID=OsAffx.19035.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2709011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g27030OsAffx.19034.1.S1_at11/1111+15064273..15064782MATH domain containing protein
LOC_Os11g27040NANA11+15069137..15070363hypothetical protein
LOC_Os11g27050OsAffx.20329.1.S1_at5/1111+15070712..15075628retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g27060NANA11+15081191..15083908retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g27070NANA11+15084545..15085688transposon protein, putative, unclassified
LOC_Os11g27080NANA11+15086186..15086955retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g27090OsAffx.19035.1.S1_at11/1111+15087873..15090846hypothetical protein
LOC_Os11g27090OsAffx.19035.1.S1_x_at11/1111+15087873..15090846hypothetical protein
LOC_Os11g27090OsAffx.13772.1.S1_at2/1111+15087873..15090846hypothetical protein
LOC_Os11g27090OsAffx.13772.1.S1_x_at1/1111+15087873..15090846hypothetical protein
LOC_Os11g27100NANA11+15094103..15096252retrotransposon, putative, centromere-specific
LOC_Os11g27110NANA11+15098616..15099968expressed protein
LOC_Os11g27120OsAffx.7215.1.S1_at11/1111+15100933..15101315hypothetical protein
LOC_Os11g27130OsAffx.31156.1.S1_at11/1111+15110974..15111707hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19035.1.S1_at--978--4711Chr11:15088187..15088211 (25 bp)
GCTGGAGTCTGCAGGAAACTCCGAG
LOC_Os11g27090
OsAffx.19035.1.S1_at--202--7511Chr11:15088119..15088143 (25 bp)
GTGGTTGAATAGGACCTGCACACAG
LOC_Os11g27090
OsAffx.19035.1.S1_at--732--7891Chr11:15088117..15088141 (25 bp)
GGTTGAATAGGACCTGCACACAGCT
LOC_Os11g27090
OsAffx.19035.1.S1_at--145--6671Chr11:15088116..15088140 (25 bp)
GTTGAATAGGACCTGCACACAGCTC
LOC_Os11g27090
OsAffx.19035.1.S1_at--52--10751Chr11:15088115..15088139 (25 bp)
TTGAATAGGACCTGCACACAGCTCG
LOC_Os11g27090
OsAffx.19035.1.S1_at--980--4191Chr11:15087935..15087959 (25 bp)
CCCGCAGAGATTGACGATCAGGCAC
LOC_Os11g27090
OsAffx.19035.1.S1_at--916--5031Chr11:15087932..15087956 (25 bp)
GCAGAGATTGACGATCAGGCACAGT
LOC_Os11g27090
OsAffx.19035.1.S1_at--286--1351Chr11:15087930..15087954 (25 bp)
AGAGATTGACGATCAGGCACAGTCA
LOC_Os11g27090
OsAffx.19035.1.S1_at--486--5771Chr11:15087923..15087947 (25 bp)
GACGATCAGGCACAGTCAATGGCGC
LOC_Os11g27090
OsAffx.19035.1.S1_at--1097--6431Chr11:15087920..15087944 (25 bp)
GATCAGGCACAGTCAATGGCGCCGC
LOC_Os11g27090
OsAffx.19035.1.S1_at--104--411Chr11:15087919..15087943 (25 bp)
ATCAGGCACAGTCAATGGCGCCGCT
LOC_Os11g27090
Target Sequence 
GCTGGAGTCTGCAGGAAACTCCGAGTTCCTCGCGGGAATCCCGAGGAGTCAGCGGCCAGATATATCTCGTGGTTGAATAG
GACCTGCACACAGCTCGAAGGGATCGGTAAGCGCATCGACGAGGCCCTAAAGCAGGAGTGTCATCGATCGAGCCGCTATG
CCAGAGGGCATGTGCTGGACTGTATCCGAGATCACCGCCCGCAGCTGCACCTCGAGTTCCTCCACGAAGGGTTCTCACGC
TCTCGGAGGACTCCCGCAGAGATTGACGATCAGGCACAGTCAATGGCGCCGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19035.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis