Browse Element(s) Details


OsAffx.19057.1.S1_at

Description tigr:9639.m02579
TID=OsAffx.19057.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2854010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g28530OsAffx.31188.1.S1_x_at11/1111+15933332..15940606Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os11g28530Os.55746.1.S1_at10/1111+15933332..15940606Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os11g28540OsAffx.19057.1.S1_at10/1111+15952822..15954879expressed protein
LOC_Os11g28540OsAffx.31133.2.S1_at1/1111+15952822..15954879expressed protein
LOC_Os11g28550NANA11+15966733..15969636retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g28560OsAffx.1412.1.S1_at3/1111+15971148..15974070retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g28570NANA11+15974491..15977493retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g28580NANA11+15977848..15980463retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19057.1.S1_at--558--331Chr11:15954193..15954217 (25 bp)
ATACTTTCCAATTGATGGCTGCCAG
LOC_Os11g28540
OsAffx.19057.1.S1_at--631--6231Chr11:15954180..15954204 (25 bp)
GATGGCTGCCAGGAAAAATACCAAC
LOC_Os11g28540
OsAffx.19057.1.S1_at--196--6551Chr11:15954135..15954159 (25 bp)
GATTTTGCACTTGATGACGGTCCAT
LOC_Os11g28540
OsAffx.19057.1.S1_at--161--5171Chr11:15954071..15954095 (25 bp)
GCAAGAAAGGCCTAAGTCATATAAC
LOC_Os11g28540
OsAffx.19057.1.S1_at--129--7131Chr11:15954056..15954080 (25 bp)
GTCATATAACAATTCGATCACCGCA
LOC_Os11g28540
OsAffx.19057.1.S1_at--450--6451Chr11:15954041..15954065 (25 bp)
GATCACCGCATGATGCTTTCGCCGG
LOC_Os11g28540
OsAffx.19057.1.S1_at--445--4171Chr11:15953980..15954004 (25 bp)
CGCCATATATCGTCAGGAAAAGATT
LOC_Os11g28540
OsAffx.19057.1.S1_at--618--1431Chr11:15953820..15953844 (25 bp)
AGAACCTATCGGATTCCTGCATCCA
LOC_Os11g28540
OsAffx.19057.1.S1_at--147--6591Chr11:15953809..15953833 (25 bp)
GATTCCTGCATCCAACTAGGATCTG
LOC_Os11g28540
OsAffx.19057.1.S1_at--107--1551NONE
AGCATACCTGTCATAAGCAACCTAG
NONE
OsAffx.19057.1.S1_at--868--2191Chr11:15952938..15952962 (25 bp)
ACAAATATCCAGCACGATCTCTTCC
LOC_Os11g28540
Target Sequence 
ATACTTTCCAATTGATGGCTGCCAGGAAAAATACCAACATGGGAAAGCAATATGGCTGGATTTTGCACTTGATGACGGTC
CATGGGAGATGACAAGGTTATATAAATGGTACATGGATGCCAGCAAGAAAGGCCTAAGTCATATAACAATTCGATCACCG
CATGATGCTTTCGCCGGCGACGGTTACTTCTGGCTAGATTTTGAAGATCTCCACGCCATATATCGTCAGGAAAAGATTGA
CGAATGCATGGATGCTAAGAAGGAAAAAGAACCTATCGGATTCCTGCATCCAACTAGGATCTGTCAAACACAGCATACCT
GTCATAAGCAACCTAGAGGCACTGTCCTATACGGGTATTACGCGTGCGAATTCCTCAGGGTTAATGGAAGGTACAGGGTT
AACGCAAAGAATTTGCCAAGAATAGAACGTCGAACAAGCTTTGACAATACAAGCATCACAAATATCCAGCACGATCTCTT
CC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19057.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis