Browse Element(s) Details


OsAffx.31188.1.S1_x_at

Description tigr:9639.m02578
TID=OsAffx.31188.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=diterpene cyclase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2853011/11Terpene synthase family, metal binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g28500OsAffx.7236.1.S1_at11/1111+15908651..15910852Terpene synthase, N-terminal domain containing protein
LOC_Os11g28510OsAffx.31187.1.S1_at11/1111+15916227..15916718hypothetical protein
LOC_Os11g28520OsAffx.19056.1.S1_at11/1111+15922706..15923347hypothetical protein
LOC_Os11g28530OsAffx.31188.1.S1_x_at11/1111+15933332..15940606Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os11g28530Os.55746.1.S1_at10/1111+15933332..15940606Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os11g28540OsAffx.19057.1.S1_at10/1111+15952822..15954879expressed protein
LOC_Os11g28540OsAffx.31133.2.S1_at1/1111+15952822..15954879expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009686biological_processgibberellic acid biosynthesis
GO:0009740biological_processgibberellic acid mediated signaling
GO:0016099biological_processmonoterpenoid biosynthesis
GO:0009507cellular_componentchloroplast
GO:0009536cellular_componentplastid
GO:0009899molecular_functionent-kaurene synthase activity
GO:0009905molecular_functionent-copalyl diphosphate synthase activity
GO:0042408molecular_functionmyrcene/(E)-beta-ocimene synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31188.1.S1_x_at--923--8411Chr11:15933924..15933948 (25 bp)
GGCCGCCTCCTGAACGACGTGATGA
LOC_Os11g28530
OsAffx.31188.1.S1_x_at--343--5451Chr11:15933913..15933937 (25 bp)
GAACGACGTGATGACCTACGAGAAG
LOC_Os11g28530
OsAffx.31188.1.S1_x_at--729--6251Chr11:15933886..15933910 (25 bp)
GATGGGCACCGGGAAGCTCAACAGC
LOC_Os11g28530
OsAffx.31188.1.S1_x_at--791--4831Chr11:15933871..15933895 (25 bp)
GCTCAACAGCGTCGTGCTGCTGCAA
LOC_Os11g28530
OsAffx.31188.1.S1_x_at--739--4271Chr11:15933727..15933751 (25 bp)
CCTGCATGGGCTGGTGTTCGGATCA
LOC_Os11g28530
OsAffx.31188.1.S1_x_at--332--9051Chr11:15933666..15933690 (25 bp)
TGCAGGGAGGTCTTCTGGCACACCG
LOC_Os11g28530
OsAffx.31188.1.S1_x_at--697--1891Chr11:15933647..15933671 (25 bp)
ACACCGGGAAGGTGGCCAGCGTCTT
LOC_Os11g28530
OsAffx.31188.1.S1_x_at--960--4411Chr11:15933633..15933657 (25 bp)
GCCAGCGTCTTCTACCAGGAGGGAG
LOC_Os11g28530
OsAffx.31188.1.S1_x_at--967--9971Chr11:15933621..15933645 (25 bp)
TACCAGGAGGGAGACGGCTACGCAC
LOC_Os11g28530
OsAffx.31188.1.S1_x_at--1160--1371Chr11:15933610..15933634 (25 bp)
AGACGGCTACGCACGGAAGGCAATG
LOC_Os11g28530
OsAffx.31188.1.S1_x_at--799--3191Chr11:15933590..15933614 (25 bp)
CAATGCGGAGCATGGCCAACGCGGT
LOC_Os11g28530
Target Sequence 
GGCCGCCTCCTGAACGACGTGATGACCTACGAGAAGGAGATGGGCACCGGGAAGCTCAACAGCGTCGTGCTGCTGCAACC
TCTCGCCGCCGGCGGCGCCGCCTCTCGCGGCGGCGGCGGCGCTCCGGCTCCGGCTCCGGCGTCCGTCGAGGCGGCCAGGG
CGGAGGTGCGGAGGGCCATCCAGGCGTCGTGGAGGGACCTGCATGGGCTGGTGTTCGGATCAGGCGGCGGCAGCAGCAGC
AGCATCATTCCCCGGCCGTGCAGGGAGGTCTTCTGGCACACCGGGAAGGTGGCCAGCGTCTTCTACCAGGAGGGAGACGG
CTACGCACGGAAGGCAATGCGGAGCATGGCCAACGCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31188.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis