Browse Element(s) Details


OsAffx.31187.1.S1_at

Description tigr:9639.m02576
TID=OsAffx.31187.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2851011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g28480OsAffx.31184.1.S1_at10/1111+15886678..15893723expressed protein
LOC_Os11g28480Os.3448.1.S1_a_at1/1111+15886678..15893723expressed protein
LOC_Os11g28490OsAffx.31186.1.S1_at11/1111+15906020..15907595Ent-kaurene synthase B, chloroplast precursor, putative
LOC_Os11g28500OsAffx.7236.1.S1_at11/1111+15908651..15910852Terpene synthase, N-terminal domain containing protein
LOC_Os11g28510OsAffx.31187.1.S1_at11/1111+15916227..15916718hypothetical protein
LOC_Os11g28520OsAffx.19056.1.S1_at11/1111+15922706..15923347hypothetical protein
LOC_Os11g28530OsAffx.31188.1.S1_x_at11/1111+15933332..15940606Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os11g28530Os.55746.1.S1_at10/1111+15933332..15940606Terpene synthase family, metal binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31187.1.S1_at--1051--4591Chr11:15916647..15916671 (25 bp)
GCGACAGCACGGTGCGGCGCGAAGG
LOC_Os11g28510
OsAffx.31187.1.S1_at--607--4111Chr11:15916628..15916652 (25 bp)
CGAAGGGATGACGTGCAGTGGCAGC
LOC_Os11g28510
OsAffx.31187.1.S1_at--567--5071Chr11:15916608..15916632 (25 bp)
GCAGCGGAGCGGGACTCTAGGCGAC
LOC_Os11g28510
OsAffx.31187.1.S1_at--224--3771Chr11:15916594..15916618 (25 bp)
CTCTAGGCGACGGTGATGCGCGTAT
LOC_Os11g28510
OsAffx.31187.1.S1_at--816--8571Chr11:15916558..15916582 (25 bp)
TGGTTCGGCGTCAGGCGCAGGGCGC
LOC_Os11g28510
OsAffx.31187.1.S1_at--844--5611Chr11:15916476..15916500 (25 bp)
GACAACGATGGCTCGTCAGTGGCAC
LOC_Os11g28510
OsAffx.31187.1.S1_at--430--2591Chr11:15916473..15916497 (25 bp)
AACGATGGCTCGTCAGTGGCACGGT
LOC_Os11g28510
OsAffx.31187.1.S1_at--1135--7111Chr11:15916462..15916486 (25 bp)
GTCAGTGGCACGGTCAGCGGAGGGC
LOC_Os11g28510
OsAffx.31187.1.S1_at--1092--1911Chr11:15916396..15916420 (25 bp)
ACGGTGACGACGTGCGGCACAGCTC
LOC_Os11g28510
OsAffx.31187.1.S1_at--37--1871Chr11:15916390..15916414 (25 bp)
ACGACGTGCGGCACAGCTCAGAGCG
LOC_Os11g28510
OsAffx.31187.1.S1_at--296--8391Chr11:15916268..15916292 (25 bp)
GGCGACGCGTGCACAGCGTGTGGCA
LOC_Os11g28510
Target Sequence 
GCGACAGCACGGTGCGGCGCGAAGGGATGACGTGCAGTGGCAGCGGAGCGGGACTCTAGGCGACGGTGATGCGCGTATGG
GGCGCGAGGTGGTTCGGCGTCAGGCGCAGGGCGCGAGGCAGCGAGCGCGACAGGCGCAGGCGCGGGGCTCGAAACGACGG
CGATGGGCGGCGACAACGATGGCTCGTCAGTGGCACGGTCAGCGGAGGGCCGCGACGGGACGACGATGGCGACGGCGCGG
TGATGATGATGACGGTGACGACGTGCGGCACAGCTCAGAGCGACGACGCGCGGCACAGCTCAGAGCGACGGCGACGGCGA
TAGGACGGTGCGCGGTGGCTCGGGGCGCGAGGGCGCGGCAGGGCGAGCGGCGTTGCGACGGCGACGCGTGCACAGCGTGT
GGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31187.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis