Browse Element(s) Details


OsAffx.7236.1.S1_at

Description tigr:9639.m02575
TID=OsAffx.7236.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to kaurene synthase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2850011/11Terpene synthase, N-terminal domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g28470OsAffx.19055.1.S1_at11/1111+15883922..15885418hypothetical protein
LOC_Os11g28480OsAffx.31184.1.S1_at10/1111+15886678..15893723expressed protein
LOC_Os11g28480Os.3448.1.S1_a_at1/1111+15886678..15893723expressed protein
LOC_Os11g28490OsAffx.31186.1.S1_at11/1111+15906020..15907595Ent-kaurene synthase B, chloroplast precursor, putative
LOC_Os11g28500OsAffx.7236.1.S1_at11/1111+15908651..15910852Terpene synthase, N-terminal domain containing protein
LOC_Os11g28510OsAffx.31187.1.S1_at11/1111+15916227..15916718hypothetical protein
LOC_Os11g28520OsAffx.19056.1.S1_at11/1111+15922706..15923347hypothetical protein
LOC_Os11g28530OsAffx.31188.1.S1_x_at11/1111+15933332..15940606Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os11g28530Os.55746.1.S1_at10/1111+15933332..15940606Terpene synthase family, metal binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7236.1.S1_at--439--5071Chr11:15909548..15909572 (25 bp)
GCAGCTGCTGCGATTTGACCTCATG
LOC_Os11g28500
OsAffx.7236.1.S1_at--495--4551Chr11:15909524..15909548 (25 bp)
GCCCTTGAGTTCGTTGAGCATCTAT
LOC_Os11g28500
OsAffx.7236.1.S1_at--304--5931Chr11:15909509..15909533 (25 bp)
GAGCATCTATGCTACAACTGCGCCA
LOC_Os11g28500
OsAffx.7236.1.S1_at--571--5511Chr11:15909013..15909037 (25 bp)
GAACAATCCAGCTTCGATAATTCGA
LOC_Os11g28500
OsAffx.7236.1.S1_at--863--6511Chr11:15908971..15908995 (25 bp)
GATATTGAGCCTTTGCTGGAGTTGT
LOC_Os11g28500
OsAffx.7236.1.S1_at--455--2831Chr11:15908942..15908966 (25 bp)
AAGTTCACAAGTTCGCTTCTCAGAA
LOC_Os11g28500
OsAffx.7236.1.S1_at--779--5511Chr11:15908902..15908926 (25 bp)
GAAAATATTGGTTCCTGGTCAACTA
LOC_Os11g28500
OsAffx.7236.1.S1_at--185--3271Chr11:15908863..15908887 (25 bp)
CAACTCTCCTCCAAAAACATATCAA
LOC_Os11g28500
OsAffx.7236.1.S1_at--428--1971Chr11:15908756..15908855 (25 bp)
ACTGACAGAGGTTACGCATGCCCTT
LOC_Os11g28500
OsAffx.7236.1.S1_at--13--4991Chr11:15908741..15908765 (25 bp)
GCATGCCCTTAAATTCCCATTGTAT
LOC_Os11g28500
OsAffx.7236.1.S1_at--949--10751Chr11:15908722..15908746 (25 bp)
TTGTATGCAACGCTGGAACCACACG
LOC_Os11g28500
Target Sequence 
GCAGCTGCTGCGATTTGACCTCATGCCCTTGAGTTCGTTGAGCATCTATGCTACAACTGCGCCATATAATTTTTGTGATA
GTTTTATTCCAGTTAGATATGGGATGGCACAATTTGCTGAACAATCCAGCTTCGATAATTCGATTCATGCATATCTCAAT
GATATTGAGCCTTTGCTGGAGTTGTACAAAAGTTCACAAGTTCGCTTCTCAGAAGATGATTTGATACTAGAAAATATTGG
TTCCTGGTCAACTAAATTACTCAAGCAACAACTCTCCTCCAAAAACATATCAAAATCTTTACTGACAGAGGTTACGCATG
CCCTTAAATTCCCATTGTATGCAACGCTGGAACCACACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7236.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis