Browse Element(s) Details


OsAffx.19100.2.S1_at

Description tigr:9639.m02825
TID=OsAffx.19100.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3115010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g31110Os.50230.1.S1_at10/1111+17604256..17610469expressed protein
LOC_Os11g31120OsAffx.7263.1.S1_at9/1111+17611808..17612866hypothetical protein
LOC_Os11g31130OsAffx.19099.1.S1_at11/1111+17618358..17619124hypothetical protein
LOC_Os11g31140NANA11+17625308..17627089hypothetical protein
LOC_Os11g31150OsAffx.19100.2.S1_at10/1111+17629607..17630502hypothetical protein
LOC_Os11g31150OsAffx.17914.1.S1_x_at1/1111+17629607..17630502hypothetical protein
LOC_Os11g31150OsAffx.1436.1.S1_x_at1/1111+17629607..17630502hypothetical protein
LOC_Os11g31160NANA11+17641431..17645089transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g31169NANA11+17646474..17646770NA
LOC_Os11g31180Os.14491.2.S1_x_at1/1111+17647755..17651395transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g31180Os.47463.1.S1_x_at1/1111+17647755..17651395transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19100.2.S1_at--291--3191NONE
CAATCAAAGATTGTGGCGGCATCCA
NONE
OsAffx.19100.2.S1_at--651--373Chr11:17630428..17630447 (20 bp)
ATCAAAGATTGTGGCGGCATCCAGA
LOC_Os11g31150
OsAffx.19100.2.S1_at--477--1252Chr11:17630428..17630452 (25 bp)
AGATTGTGGCGGCATCCAGAAGCCA
LOC_Os11g31150
OsAffx.19100.2.S1_at--414--6612Chr11:17630429..17630453 (25 bp)
GATTGTGGCGGCATCCAGAAGCCAA
LOC_Os11g31150
OsAffx.19100.2.S1_at--640--32Chr11:17630430..17630454 (25 bp)
ATTGTGGCGGCATCCAGAAGCCAAA
LOC_Os11g31150
OsAffx.19100.2.S1_at--43--10852Chr11:17630431..17630455 (25 bp)
TTGTGGCGGCATCCAGAAGCCAAAA
LOC_Os11g31150
OsAffx.19100.2.S1_at--1016--7532Chr11:17630433..17630457 (25 bp)
GTGGCGGCATCCAGAAGCCAAAATT
LOC_Os11g31150
OsAffx.19100.2.S1_at--666--8353Chr11:17630435..17630459 (25 bp)
GGCGGCATCCAGAAGCCAAAATTGC
LOC_Os11g31150
OsAffx.19100.2.S1_at--233--3952Chr11:17630437..17630461 (25 bp)
CGGCATCCAGAAGCCAAAATTGCTG
LOC_Os11g31150
OsAffx.19100.2.S1_at--582--3413Chr11:17630444..17630468 (25 bp)
CAGAAGCCAAAATTGCTGGTGAAAT
LOC_Os11g31150
OsAffx.19100.2.S1_at--586--2652Chr11:17630447..17630471 (25 bp)
AAGCCAAAATTGCTGGTGAAATAAT
LOC_Os11g31150
Target Sequence 
CAATCAAAGATTGTGGCGGCATCCAGAAGCCAAAATTGCTGGTGAAATAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19100.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis