Browse Element(s) Details


OsAffx.19114.1.S1_x_at

Description tigr:9639.m02916
TID=OsAffx.19114.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to Rab geranylgeranyl transferase componenet, subunit beta
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3209011/11Geranylgeranyl transferase type II beta subunit, putative
LOC_Os08g401401/11Geranylgeranyl transferase type II beta subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32040NANA11+18382099..18382452hypothetical protein
LOC_Os11g32050NANA11+18384484..18386441expressed protein
LOC_Os11g32060NANA11+18387372..18392264retrotransposon protein, putative, unclassified
LOC_Os11g32070OsAffx.31260.1.S1_at11/1111+18397584..18398977LGC1, putative
LOC_Os11g32080OsAffx.7272.1.S1_at11/1111+18399610..18400109LGC1, putative
LOC_Os11g32090OsAffx.19114.1.S1_x_at11/1111+18402470..18403162Geranylgeranyl transferase type II beta subunit, putative
LOC_Os11g32100Os.56356.1.S1_at11/1111+18420661..18423855Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009414biological_processresponse to water deprivation
GO:0009733biological_processresponse to auxin stimulus
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009788biological_processnegative regulation of abscisic acid mediated signaling
GO:0018344biological_processprotein geranylgeranylation
GO:0005953cellular_componentCAAX-protein geranylgeranyltransferase complex
GO:0004662molecular_functionCAAX-protein geranylgeranyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19114.1.S1_x_at--105--3371Chr11:18403052..18403076 (25 bp)
CACCGCCTCGATCGCAAAGCATTTG
LOC_Os11g32090
OsAffx.19114.1.S1_x_at--242--4211Chr11:18403050..18403074 (25 bp)
CCGCCTCGATCGCAAAGCATTTGGC
LOC_Os11g32090
OsAffx.19114.1.S1_x_at--425--4171Chr11:18403049..18403073 (25 bp)
CGCCTCGATCGCAAAGCATTTGGCC
LOC_Os11g32090
OsAffx.19114.1.S1_x_at--1100--4451Chr11:18403048..18403072 (25 bp)
GCCTCGATCGCAAAGCATTTGGCCC
LOC_Os11g32090
OsAffx.19114.1.S1_x_at--925--3771Chr11:18403046..18403070 (25 bp)
CTCGATCGCAAAGCATTTGGCCCAG
LOC_Os11g32090
OsAffx.19114.1.S1_x_at--220--9391Chr11:18403045..18403069 (25 bp)
TCGATCGCAAAGCATTTGGCCCAGC
LOC_Os11g32090
OsAffx.19114.1.S1_x_at--408--2711Chr11:18403036..18403060 (25 bp)
AAGCATTTGGCCCAGCCGGCGCAGC
LOC_Os11g32090
OsAffx.19114.1.S1_x_at--1057--1233Chr11:18402321..18402342 (22 bp)
AGTTGCTCGATGCAGCGGCTGATTC
NONE
OsAffx.19114.1.S1_x_at--641--6571Chr11:18402901..18402925 (25 bp)
GATTCTGATTGGATGCTCTTCGCCG
LOC_Os11g32090
OsAffx.19114.1.S1_x_at--321--3351Chr11:18402763..18402787 (25 bp)
CACGCCGTGGAAGCCGACGAGTTTA
LOC_Os11g32090
OsAffx.19114.1.S1_x_at--807--6071Chr11:18402745..18402769 (25 bp)
GAGTTTATCGAGTGGATCATGTCCT
LOC_Os11g32090
Target Sequence 
CACCGCCTCGATCGCAAAGCATTTGGCCCAGCCGGCGCAGCCATGGGGGATGGAAAGGGAGCTGGCGGCGGAGAAGCACG
TCCGCTACATCGTCACCATGGAGAAGGTAGGCCGCCTCTCGCTCGGATGCGAGTTGCTCGATGCAGCGGCTGATTCTGAT
TGGATGCTCTTCGCCGCCGCTGCTGCTGTGATGCAGAAGAAGGACTCGTTCGAGTCGCTGGTGATGGAGCACATCCGGCT
CAACGGCGCGTACTGGGGCCTTACCACGCTCGACCTCCTCCACAAGCTCCACGCCGTGGAAGCCGACGAGTTTATCGAGT
GGATCATGTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19114.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis