Browse Element(s) Details


OsAffx.19149.1.S1_at

Description tigr:9639.m03061
TID=OsAffx.19149.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3407011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g34050NANA11+19402819..19406076retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g34060NANA11+19409245..19410883retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g34070OsAffx.19149.1.S1_at11/1111+19423950..19425676hypothetical protein
LOC_Os11g34080Os.6231.1.S1_at11/1111+19438274..19439678expressed protein
LOC_Os11g34080OsAffx.31032.1.S1_at1/1111+19438274..19439678expressed protein
LOC_Os11g34090OsAffx.7292.1.S1_at11/1111+19448650..19452078hypothetical protein
LOC_Os11g34090OsAffx.7292.1.S1_x_at11/1111+19448650..19452078hypothetical protein
LOC_Os11g34090OsAffx.31930.1.S1_x_at1/1111+19448650..19452078hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19149.1.S1_at--130--1411Chr11:19425517..19425541 (25 bp)
AGACAAGTGGGTGTGGACCAACCGA
LOC_Os11g34070
OsAffx.19149.1.S1_at--6--7731Chr11:19425525..19425549 (25 bp)
GGGTGTGGACCAACCGATCGATCAA
LOC_Os11g34070
OsAffx.19149.1.S1_at--56--7531Chr11:19425529..19425553 (25 bp)
GTGGACCAACCGATCGATCAACCGA
LOC_Os11g34070
OsAffx.19149.1.S1_at--437--9391Chr11:19425542..19425566 (25 bp)
TCGATCAACCGACCGATATGTAGAG
LOC_Os11g34070
OsAffx.19149.1.S1_at--504--1791Chr11:19425549..19425573 (25 bp)
ACCGACCGATATGTAGAGTAGCAGT
LOC_Os11g34070
OsAffx.19149.1.S1_at--131--6091Chr11:19425564..19425588 (25 bp)
GAGTAGCAGTGATGATACGGATCAT
LOC_Os11g34070
OsAffx.19149.1.S1_at--901--711Chr11:19425575..19425599 (25 bp)
ATGATACGGATCATCATATCGATCG
LOC_Os11g34070
OsAffx.19149.1.S1_at--395--6391Chr11:19425595..19425619 (25 bp)
GATCGATATGATCAGTCTCTCGGTG
LOC_Os11g34070
OsAffx.19149.1.S1_at--279--8851Chr11:19425603..19425627 (25 bp)
TGATCAGTCTCTCGGTGTGGGTCAA
LOC_Os11g34070
OsAffx.19149.1.S1_at--516--1031Chr11:19425608..19425632 (25 bp)
AGTCTCTCGGTGTGGGTCAAGGATT
LOC_Os11g34070
OsAffx.19149.1.S1_at--99--7831Chr11:19425622..19425646 (25 bp)
GGTCAAGGATTACACGCTTGATCCA
LOC_Os11g34070
Target Sequence 
AGACAAGTGGGTGTGGACCAACCGATCGATCAACCGACCGATATGTAGAGTAGCAGTGATGATACGGATCATCATATCGA
TCGATATGATCAGTCTCTCGGTGTGGGTCAAGGATTACACGCTTGATCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19149.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis