Browse Element(s) Details


OsAffx.19216.1.S1_at

Description tigr:9639.m03390
TID=OsAffx.19216.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3747011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g37420Os.47463.1.S1_x_at6/1111+21593266..21601822transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g37420Os.14491.2.S1_x_at4/1111+21593266..21601822transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g37430Os.27691.1.S1_x_at2/1111+21605724..21606877retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g37430Os.27691.2.S1_x_at1/1111+21605724..21606877retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g37440NANA11+21607131..21611404retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g37460Os.50120.1.S1_at1/1111+21614659..21617988transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g37470OsAffx.19216.1.S1_at11/1111+21621434..21623485hypothetical protein
LOC_Os11g37480NANA11+21629583..21629801hypothetical protein
LOC_Os11g37490Os.56065.1.S1_s_at11/1111+21633112..21633876expressed protein
LOC_Os11g37500OsAffx.7327.1.S1_at11/1111+21634791..21635297hypothetical protein
LOC_Os11g37510Os.13975.1.S1_at11/1111+21638610..21642206ribosomal protein L4/L1 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19216.1.S1_at--249--4891Chr11:21623212..21623236 (25 bp)
GCTTTCATCGCGACAGGTAACCATG
LOC_Os11g37470
OsAffx.19216.1.S1_at--654--9051Chr11:21623189..21623213 (25 bp)
TGCATGGAAGTACCAACTCGCCACG
LOC_Os11g37470
OsAffx.19216.1.S1_at--562--6791Chr11:21622145..21622169 (25 bp)
GTTATGTCATTTGTGCTTCTTCGAA
LOC_Os11g37470
OsAffx.19216.1.S1_at--412--951Chr11:21622121..21622145 (25 bp)
AGGAGCACCCAGATTTCCTTGGGAT
LOC_Os11g37470
OsAffx.19216.1.S1_at--426--7991Chr11:21622100..21622124 (25 bp)
GGATGGAGTCATCCGTCGCAAAGAT
LOC_Os11g37470
OsAffx.19216.1.S1_at--627--9632Chr11:21621939..21621963 (25 bp)
TCATGGACTTTATGGTGCTGCCTGC
LOC_Os11g37470
OsAffx.19216.1.S1_at--507--9112Chr11:21621924..21621948 (25 bp)
TGCTGCCTGCCCTGAGAACGGATGT
LOC_Os11g37470
OsAffx.19216.1.S1_at--380--6272Chr11:21621904..21621928 (25 bp)
GATGTGCTGTGCGATTCCGTACGGA
LOC_Os11g37470
OsAffx.19216.1.S1_at--368--10632Chr11:21621890..21621914 (25 bp)
TTCCGTACGGAGGAGCATCGTTTAT
LOC_Os11g37470
OsAffx.19216.1.S1_at--980--4972Chr11:21621876..21621900 (25 bp)
GCATCGTTTATTACACGTTCAGAAC
LOC_Os11g37470
OsAffx.19216.1.S1_at--123--5472Chr11:21621855..21621879 (25 bp)
GAACTGTCAAGAACTCCTCGAGGTG
LOC_Os11g37470
Target Sequence 
GCTTTCATCGCGACAGGTAACCATGCATGGAAGTACCAACTCGCCACGGCAAGAAAGAAAGAGGAGCCGGATGAGGAAGA
GGGAGACGATCAGCCGCAGGACGGCGATCTGAAAGATGACCAGGTTTTGGATAATCCTTACCAGAAAAAGAAGAAATACA
AGGAATTCAATGATGCCAGGGCAAAATTCTCAGAAAAGTTCGAGTTATGTCATTTGTGCTTCTTCGAAGGAGCACCCAGA
TTTCCTTGGGATGGAGTCATCCGTCGCAAAGATGTAATCAAACATGTTTACGAAAATCATGGACTTTATGGTGCTGCCTG
CCCTGAGAACGGATGTGCTGTGCGATTCCGTACGGAGGAGCATCGTTTATTACACGTTCAGAACTGTCAAGAACTCCTCG
AGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19216.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis