Browse Element(s) Details


OsAffx.19221.1.S1_at

Description tigr:9639.m03412
TID=OsAffx.19221.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3768011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g37670OsAffx.31350.1.S1_at11/1111+21740077..21743107expressed protein
LOC_Os11g37680OsAffx.19221.1.S1_at11/1111+21760128..21764827hypothetical protein
LOC_Os11g37690Os.10010.1.S1_at11/1111+21766158..21770126RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os11g37700Os.5349.1.S1_at10/1111+21771553..21780972ABC transporter, putative, expressed
LOC_Os11g37710Os.27639.1.S1_x_at5/1111+21788671..21793470transposon protein, putative, unclassified
LOC_Os11g37710OsAffx.8980.1.S1_at1/1111+21788671..21793470transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19221.1.S1_at--353--2071Chr11:21763883..21763907 (25 bp)
ACTTGCAGTCCGTCCATGTGAGGCT
LOC_Os11g37680
OsAffx.19221.1.S1_at--473--1571Chr11:21763608..21763632 (25 bp)
AGCTAGGTTCGCTTCCTTTATTTAT
LOC_Os11g37680
OsAffx.19221.1.S1_at--736--6531Chr11:21762027..21762051 (25 bp)
GATTTCAAGGTTGCTCCAGTGCCTA
LOC_Os11g37680
OsAffx.19221.1.S1_at--999--10191Chr11:21762004..21762028 (25 bp)
TATTTGTCTGTGTCCTCTCATGGCT
LOC_Os11g37680
OsAffx.19221.1.S1_at--84--3631Chr11:21760925..21760949 (25 bp)
CTTCCCCTCTCAAAGACAGTTAGAC
LOC_Os11g37680
OsAffx.19221.1.S1_at--766--5491Chr11:21760647..21760671 (25 bp)
GAACATGTGGTGGACATCATCTGAT
LOC_Os11g37680
OsAffx.19221.1.S1_at--49--2991Chr11:21760619..21760643 (25 bp)
AATGTCTCCTCCTGTATTCTGTTGG
LOC_Os11g37680
OsAffx.19221.1.S1_at--914--10211Chr11:21760605..21760629 (25 bp)
TATTCTGTTGGCTGGCCATGGCCAA
LOC_Os11g37680
OsAffx.19221.1.S1_at--442--411Chr11:21760555..21760579 (25 bp)
ATCAGGAGCAGAGCCTCTTGCAGGC
LOC_Os11g37680
OsAffx.19221.1.S1_at--281--6491Chr11:21760225..21760249 (25 bp)
GATACCAATCACTTGTGCTGAGCCA
LOC_Os11g37680
OsAffx.19221.1.S1_at--603--7311Chr11:21760211..21760235 (25 bp)
GTGCTGAGCCAAGCTGCCATGGCAT
LOC_Os11g37680
Target Sequence 
ACTTGCAGTCCGTCCATGTGAGGCTGCCCCAGCTAGGTTCGCTTCCTTTATTTATTATAGGCTAAGAGTTGAAATCATCG
ATAATGTGCTTATAGCAAGGTGGATTTCAAGGTTGCTCCAGTGCCTATTTGTCTGTGTCCTCTCATGGCTTTGTGCTTTG
GGCTTGGAGATAGATTGCCTAGAGGTATTACCAAGAACAGCTAAAAATCTCAGCCAGATCCACATAAAGATTGGTTCTTT
TTTTCTTCCCCTCTCAAAGACAGTTAGACAGCATCAGAGGAAGGGGAGGAACATGTGGTGGACATCATCTGATGGCAATG
TCTCCTCCTGTATTCTGTTGGCTGGCCATGGCCAAGGCCAAGAACAACTGAATGGGCTCAATCAGGAGCAGAGCCTCTTG
CAGGCTGCTGGGAGGGATACCAAGAAAAGATACCAATCACTTGTGCTGAGCCAAGCTGCCATGGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19221.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis