Browse Element(s) Details


OsAffx.19240.1.S1_at

Description tigr:9639.m03531
TID=OsAffx.19240.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3884011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38810Os.15682.1.A1_at11/1111+22576196..22580359mannose-6-phosphate isomerase, class I family protein, expressed
LOC_Os11g38820Os.46862.1.S1_at8/1111+22589479..22595092retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g38820OsAffx.20329.1.S1_at2/1111+22589479..22595092retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g38830NANA11+22595980..22596465hypothetical protein
LOC_Os11g38840OsAffx.19240.1.S1_at11/1111+22602933..22603470hypothetical protein
LOC_Os11g38850OsAffx.19241.1.S1_at11/1111+22618618..22621870Protein kinase domain containing protein
LOC_Os11g38860Os.46753.1.S1_at11/1111+22627166..22631595Methyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19240.1.S1_at--792--10591Chr11:22603411..22603435 (25 bp)
TTCTCCTTCGAGACGCCCCAGCGGC
LOC_Os11g38840
OsAffx.19240.1.S1_at--748--9451Chr11:22603102..22603126 (25 bp)
TCGGCGTCGACAGCACCAGGGACTG
LOC_Os11g38840
OsAffx.19240.1.S1_at--526--8371Chr11:22603100..22603124 (25 bp)
GGCGTCGACAGCACCAGGGACTGCC
LOC_Os11g38840
OsAffx.19240.1.S1_at--997--7211Chr11:22603097..22603121 (25 bp)
GTCGACAGCACCAGGGACTGCCGTC
LOC_Os11g38840
OsAffx.19240.1.S1_at--465--5651Chr11:22603094..22603118 (25 bp)
GACAGCACCAGGGACTGCCGTCGGA
LOC_Os11g38840
OsAffx.19240.1.S1_at--844--4491Chr11:22603063..22603087 (25 bp)
GCCGTGGTGCCACGGCGCGTAATCC
LOC_Os11g38840
OsAffx.19240.1.S1_at--643--10291Chr11:22603028..22603052 (25 bp)
TTTGCCTTGGGCGATGACGCCGAGT
LOC_Os11g38840
OsAffx.19240.1.S1_at--616--4071Chr11:22603008..22603032 (25 bp)
CGAGTGGCATGTCATCGGCTCACGT
LOC_Os11g38840
OsAffx.19240.1.S1_at--146--6131Chr11:22603007..22603031 (25 bp)
GAGTGGCATGTCATCGGCTCACGTG
LOC_Os11g38840
OsAffx.19240.1.S1_at--855--1091Chr11:22603006..22603030 (25 bp)
AGTGGCATGTCATCGGCTCACGTGG
LOC_Os11g38840
OsAffx.19240.1.S1_at--485--3511Chr11:22603001..22603025 (25 bp)
CATGTCATCGGCTCACGTGGCGGGC
LOC_Os11g38840
Target Sequence 
TTCTCCTTCGAGACGCCCCAGCGGCGACGCGGCGGATGAGGGCGGCGTGGCGGGGCGGTGGGGCTCCCTTGTCGGGTTCT
TCCACAACCACAACCATGGCGCCTGGGCGAACAACCGCTCCATCCCTGTCGGCGTCGACAGCACCAGGGACTGCCGTCGG
AGCCGCCGCCGTGGTGCCACGGCGCGTAATCCCGGCGGGGTGTTTGCCTTGGGCGATGACGCCGAGTGGCATGTCATCGG
CTCACGTGGCGGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19240.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis