Browse Element(s) Details


Os.15682.1.A1_at

Description gb:AK110698.1
DB_XREF= gi:32995907
TID=Os.15682.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15682 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-170-B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-170-B05, full insert sequence.
FL= gb:AK110698.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3881011/11mannose-6-phosphate isomerase, class I family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38770OsAffx.19239.1.S1_at11/1111+22556906..22557789NA
LOC_Os11g38780OsAffx.31373.1.S1_at11/1111+22559202..22559777EF hand family protein
LOC_Os11g38790NANA11+22562352..22562676hypothetical protein
LOC_Os11g38800Os.6005.1.S1_at11/1111+22564635..22571192Zinc finger protein, putative, expressed
LOC_Os11g38800OsAffx.31374.1.S1_at8/1111+22564635..22571192Zinc finger protein, putative, expressed
LOC_Os11g38810Os.15682.1.A1_at11/1111+22576196..22580359mannose-6-phosphate isomerase, class I family protein, expressed
LOC_Os11g38820Os.46862.1.S1_at8/1111+22589479..22595092retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g38820OsAffx.20329.1.S1_at2/1111+22589479..22595092retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g38830NANA11+22595980..22596465hypothetical protein
LOC_Os11g38840OsAffx.19240.1.S1_at11/1111+22602933..22603470hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0007568biological_processaging
GO:0009416biological_processresponse to light stimulus
GO:0009744biological_processresponse to sucrose stimulus
GO:0004476molecular_functionmannose-6-phosphate isomerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15682.1.A1_at--527--6071Chr11:22579783..22579807 (25 bp)
GAGTTTGAAGTCGATCGCTGCCTGC
LOC_Os11g38810
Os.15682.1.A1_at--43--9011Chr11:22579818..22579842 (25 bp)
TGAATCGGTCACCATGTCACCGGTG
LOC_Os11g38810
Os.15682.1.A1_at--965--6191Chr11:22579888..22579912 (25 bp)
GAGGCAGATTCCATGCTTGATGAAG
LOC_Os11g38810
Os.15682.1.A1_at--702--6151Chr11:22579957..22579981 (25 bp)
GAGGTCAGGATCCTTGCTTCTGGTC
LOC_Os11g38810
Os.15682.1.A1_at--901--10711Chr11:22579970..22579994 (25 bp)
TTGCTTCTGGTCCTGGGAGCATGCA
LOC_Os11g38810
Os.15682.1.A1_at--127--1611Chr11:22580029..22580053 (25 bp)
AGCTGACTTCAATAACACCGCAAAT
LOC_Os11g38810
Os.15682.1.A1_at--323--7151Chr11:22580102..22580126 (25 bp)
GTCTTACTGTCGTCCTTTCATTTTA
LOC_Os11g38810
Os.15682.1.A1_at--715--331Chr11:22580173..22580197 (25 bp)
ATAAAGTCTCTCTCTTTCATACCCT
LOC_Os11g38810
Os.15682.1.A1_at--296--10331Chr11:22580187..22580211 (25 bp)
TTTCATACCCTTAATCCTGTTTATT
LOC_Os11g38810
Os.15682.1.A1_at--473--3131Chr11:22580228..22580252 (25 bp)
AATTTACATTTTTCAGTACGCTGGA
LOC_Os11g38810
Os.15682.1.A1_at--1065--5911Chr11:22580273..22580297 (25 bp)
GAGCTTCTAGTTTCGATTATTCATT
LOC_Os11g38810
Target Sequence 
GAGTTTGAAGTCGATCGCTGCCTGCTGCCCTCCGGTGAATCGGTCACCATGTCACCGGTGCCTGGCCCATCCATCTTCCT
TGTCATGACAGGGGAAGGCAAGATTGAGGCAGATTCCATGCTTGATGAAGGAAAGGCAAAGGAAGGCGATGTTTTCTTCG
TGCCGGCGCACACCGAGGTCAGGATCCTTGCTTCTGGTCCTGGGAGCATGCAGCTTTACAGGGCTGGGGTGAACAGCAGA
TTCTTCAGCTGACTTCAATAACACCGCAAATCTTCAGGGATTAAAGGTTATTGCGAGAGTAATTGGTAGGAAAACGGGTG
TCTTACTGTCGTCCTTTCATTTTATCATAAGGTAGCTAGTTAAGCCATCATAGTGTATAGGCAAATGGAGATAAAGTCTC
TCTCTTTCATACCCTTAATCCTGTTTATTTTTTTCCNCCAATATGTAATTTACATTTTTCAGTACGCTGGAAGCAAATGA
AATCTGTAGATGAGCTTCTAGTTTCGATTATTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15682.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis